Aster yellows witches'-broom phytoplasma AYWB: AYWB_460
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Entry
AYWB_460 CDS
T00314
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' chain
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ayw
Aster yellows witches'-broom phytoplasma AYWB
Pathway
ayw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ayw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AYWB_460 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ayw03021
]
AYWB_460 (rpoC)
03400 DNA repair and recombination proteins [BR:
ayw03400
]
AYWB_460 (rpoC)
Enzymes [BR:
ayw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AYWB_460 (rpoC)
Transcription machinery [BR:
ayw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AYWB_460 (rpoC)
DNA repair and recombination proteins [BR:
ayw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AYWB_460 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Acyl-CoA_ox_N
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
ABC65577
UniProt:
Q2NJ16
LinkDB
All DBs
Position
complement(475358..479419)
Genome browser
AA seq
1353 aa
AA seq
DB search
MSDNRLFTSVETLNLSSPVLEKLKLSGINTLEDFNTFTLEELRLLLQEAFLEVLPILKNF
ALPRNLQNLDLSEAVINILTELGMEDFQDLLQTKMAVLTKSFETNPLAFQKLNDLFKLYN
HFPSISSDKEYGSRDYDYFKIRLAAPEEIRQWSYGEVTSYETINYRTYKPEISGLFCQKI
FGPVVDFQCACSKKQVSIKSQFCNKCGVEFTETKVRRERMGHIELQTPIVHTWYLNSSPS
RLAILLNIKTKQLEEIVYYVSYVVIDPGKTEFKPKEIITETQYSEALYEFGNTFVALTGA
EAVKKLLENLNLEKTIKVLRKSLSENSKQKRESIIKRLEIIESFHQSDNKPEWMVMDVIP
VLPPGLRPMVPLDGGRFATTEVNDLYRRILNRNNRLKKQMLQKAPRLIIKNEKRMLQEAV
DALFDNTKTSKKNVNNVEKNRPLKSLSEMLRGKQGRFRQNLLGKRVDYSGRSVIIVGPDL
EMHQCGVPREMAIILFKPFILKKLQETKGIDKKNANTIYEKMNEEVWNALEEVVKEHPVL
LNRAPTLHRLGIQAFDPKLIDGKAIRLHPLVTPAFNADFDGDQMAIYVPLSLEAQAEARL
LMLVSNNILDPKNGNPVVTPSQDMVLGNYYLTIEEKKDRTINSYDSAQRTAEHQFKHRNE
GTFFADINEAKTAYQNKEIHLHTRIFIKPQTINLSFTEEQRQKYLMTTLGKLIFNDILPP
SFPYINEPTQFNLDVKTPDAYFLPPGTNPKQFLKKLPTPKPFNKKFLSMIIACFFKQMKI
TETSKMLDHIKNLGFKYSTIAGITVSFADINTYSNKQELLQEVETRNIQIETWHKDGFLT
DAERRRLVINEWKTIRDEIQEGLMKEFKQDNHIFMMSESGARGSVSNFTQLAGMRGLMNN
PKGEIIEVPVKASFREGLKVSEFFISTHGARKGSTDTALKTAESGYLTRRLVDVTQDIVV
IKEDCNSDRGFIVEAMMSDGKEIVSLKKRIMGRFASCDICHPKTNTLIVARNELIIESKA
QEIITAKIKKVPIRSILTCNCEYGICAKDYGVNLATNKLVEIGEAVGVIAAQSIGEPGTQ
LTMRTFHTGGVASASDITQGLPRIEELFEVRKPKGKALISELKGKIKKIDKIRSQNPEIV
ITEENDPDTEHRYILEPNVDILVSKNNIVYPGQKLTSGSVDLKELLRVAGTTEVQKYILE
EVQKVYRAQNVYISDKHIEIIIHQMFKQILIIDEGDTHLLPGTEITINKFKKANLKMLEE
KKRLAVGRPIILGITRSSLRSDSLLSAASFQETTKILIDAAIKGKTDHLYGLKENVIIGG
LIPAGTGILETTLFKYPKEPATTSELTKKTNQN
NT seq
4062 nt
NT seq
+upstream
nt +downstream
nt
atgagtgataatagattatttacttcagtagaaactttaaatctttcgtctccagtttta
gaaaaattaaaactttctggaatcaatactttggaggattttaacacttttactttagaa
gagttgaggcttttactgcaagaagcttttttagaggttttgcctatcctcaaaaacttt
gccttacctcgcaatttacaaaatctagatttgagtgaggctgttattaacatccttact
gaactaggaatggaagattttcaagatcttttgcaaactaaaatggctgtccttacaaaa
tcatttgaaaccaatccccttgcttttcaaaaactaaacgacctatttaagttatataat
cattttccttctatttcatctgataaagaatacggtagtagagattatgattattttaaa
atccgtttagctgctcctgaagaaatcagacagtggtcttatggtgaggttaccagctac
gaaacaattaactatcggacctataaaccagagatatcaggattattttgtcaaaagatt
tttggcccagtagttgatttccaatgtgcttgttctaaaaaacaagtcagtatcaaaagt
caattttgtaacaaatgtggagttgaatttaccgaaaccaaagtgcgtcgtgaaagaatg
gggcacattgaattacaaactccaatcgttcacacttggtaccttaattcttctcccagc
cgtttagctattcttttaaatatcaaaactaaacaattagaagaaatagtttattatgtt
tcttacgttgtaattgatcctggaaaaactgaattcaaacctaaagaaattattacagaa
acccaatacagtgaagctctttatgaatttggaaacacttttgtagctttaacaggtgcc
gaagcggttaaaaaattactagaaaatctcaacttagaaaaaactatcaaagtccttcgc
aaatctttatcggaaaattccaaacaaaaaagagaaagcatcattaaaagactagaaatc
atcgaatcttttcatcaatcagacaacaaacctgaatggatggtaatggatgttattcct
gtattgcctccaggattaagaccgatggttcctttagatggtggtcgttttgccactact
gaagttaacgatctttaccgccgtatccttaatcgcaacaatcgtttaaaaaaacaaatg
ctccaaaaagctcctcgtttaatcattaaaaacgaaaaaagaatgctacaagaagcagtt
gatgctttgtttgataataccaaaactagcaaaaaaaacgttaacaatgtcgaaaaaaac
cgtccacttaaatctttatccgaaatgctacgtggcaaacaagggcgtttccgtcaaaat
cttttaggcaaaagagttgattattcgggacgctccgtaattattgtaggtcctgattta
gaaatgcaccaatgcggcgtgcctcgtgaaatggcaattattttgttcaaacctttcatt
ttgaaaaaattacaagaaaccaaaggtatcgataaaaaaaacgctaacaccatttatgaa
aaaatgaatgaagaggtttggaacgccttagaagaagtagtcaaagaacacccagttctt
ttaaaccgcgccccaacgctacaccgtttaggaattcaagcttttgatcctaaattaatt
gacggcaaagccattcgcttacatcctttagttacgcctgcctttaatgccgatttcgat
ggcgaccagatggcaatttatgttcctctttctttagaagcgcaggctgaagcacgctta
ttgatgcttgtttcgaacaatattttagaccctaaaaatggtaatccagtagtaactcct
tcacaagatatggttttagggaattactatttaacgattgaagaaaaaaaagatcgtact
ataaacagttatgattctgcccaaagaactgcagaacaccaattcaaacatcgtaatgaa
ggaaccttttttgctgatatcaacgaagccaaaactgcttatcaaaataaagaaatccat
cttcatacaagaatttttatcaaaccacaaacaattaatttatcatttaccgaagaacaa
cgtcaaaaatatttaatgactactttaggaaaattaatttttaatgacattttgcctcca
agcttcccctacattaatgaaccaacccagtttaatttggatgttaaaacccctgatgct
tattttttacccccaggaaccaaccccaaacaattcttaaaaaaacttcccacccccaaa
cctttcaacaaaaaattcctatctatgattattgcatgttttttcaaacaaatgaaaatt
acagaaacttctaaaatgctagatcatatcaaaaacttaggtttcaagtattccaccatt
gcaggaattacagtttcatttgcagacatcaatacttactccaataaacaagaattgtta
caagaagtagaaacccgcaatattcaaattgagacttggcataaagatggttttttaaca
gatgccgaacgtcgtcgtttagtaattaacgaatggaaaactattcgtgatgaaattcaa
gaaggtttgatgaaagaattcaaacaagacaaccacatttttatgatgagcgaaagtgga
gcgcgtggtagtgtttctaactttactcaattagcagggatgagaggattaatgaataac
cctaaaggtgaaattattgaagtccctgttaaagcttctttccgagaaggtctgaaagtt
tctgagttttttatctctactcacggcgcccgtaaaggttcaactgatactgccctcaaa
acagctgagtcaggttatctaacacgtcgtttagttgacgtaactcaagatattgtcgtt
attaaagaagactgtaatagtgaccgcgggtttattgtggaagctatgatgagtgatggc
aaagaaattgtatctctcaaaaaacgcattatgggacgctttgctagttgcgacatttgt
caccccaaaaccaacacccttattgtagcgcgtaatgaattaattatcgagtctaaagca
caagaaattattactgccaaaattaaaaaagttcctattagaagtattttaacttgtaat
tgtgaatatggtatttgtgccaaagactatggcgtaaatctagctactaacaaattagta
gaaattggcgaagctgttggtgttattgctgctcaatccatcggtgaaccaggaactcaa
ttaactatgagaactttccatactggtggagttgcttctgcctcagatattactcaaggt
cttccaaggatcgaagaattatttgaagtacgcaaacctaaaggaaaagcgctaattagt
gaattaaaaggaaaaatcaaaaaaattgataaaatccgttcccaaaatccagaaattgta
attacagaagaaaatgaccctgacacagaacaccgttatattttggaacctaatgttgat
attttagtaagcaaaaacaacattgtttatcctggtcaaaaactaacttctggttcggtt
gatctaaaagaacttttaagagtggcaggaacaacagaggttcaaaaatacatcttagaa
gaagtacaaaaagtttatcgcgcccaaaatgtttatatcagcgacaaacatatcgaaatt
attattcaccaaatgtttaaacaaattttaattattgatgaaggtgatactcatctttta
cctggcacagaaattactattaataaatttaaaaaagctaatttaaaaatgttagaagaa
aaaaaacgtttagcggtgggacgccctattattttaggaattacgcgttcttctttaaga
agtgattctttactttcagctgcatcttttcaagaaactaccaaaattctaatcgatgct
gccatcaaagggaaaactgaccatctttacggacttaaagaaaatgttattattggtggc
ttaattcctgcaggaacaggaattttagaaactactttatttaaatatccaaaagaacct
gcaaccacttctgaacttactaaaaaaaccaaccaaaattaa
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