Aster yellows witches'-broom phytoplasma AYWB: AYWB_461
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Entry
AYWB_461 CDS
T00314
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase beta chain
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ayw
Aster yellows witches'-broom phytoplasma AYWB
Pathway
ayw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ayw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AYWB_461 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ayw03021
]
AYWB_461 (rpoB)
03400 DNA repair and recombination proteins [BR:
ayw03400
]
AYWB_461 (rpoB)
Enzymes [BR:
ayw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AYWB_461 (rpoB)
Transcription machinery [BR:
ayw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AYWB_461 (rpoB)
DNA repair and recombination proteins [BR:
ayw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AYWB_461 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
IML1_N
Motif
Other DBs
NCBI-ProteinID:
ABC65578
UniProt:
Q2NJ15
LinkDB
All DBs
Position
complement(479423..483244)
Genome browser
AA seq
1273 aa
AA seq
DB search
MGYHNVKYGKKAQRRNYSKTIYDVDLPNLIEIQNQSFDWFLKHGIKELLQDFCPIESYNG
DLKIHFDDYFLTPPKYSIEETKIKDISYVAQLFVKTTLENVLTGETKQSNILLTELPLMT
STGTFIINGTERVVVSQIVRSASVYFAGNFDIKLNRTIYSGQVIPSRGAWIEYEEGSKEI
LYAKLDRSKKIPLSNFIYALGFDSKEAIENVFGKSAILDSVFDKETDMDSDNALVELYSK
IRQGEKVPVDTARDFIRTRLFDQKKYDLAKVGRYKFNKKLDVLTRAENTYLACDFVNPEN
QEIMIAQDELLTKEKIAILKQNRHFLLQEIFDAKHNLENETDEEILAYKKYPQKNELFTK
TNIINSRTGEVLVAKDTLVNDDIINHLRHNIHTLDEKVSKFFLGTKDIYQKEADRQGVFN
EILEVYTSKDESGKLYNKVKLIGNDQRETKKHITLSDVIASINYYLNLYENVGTVDDIDH
LGNRRLRLIGELLKNQFRIGLTRAEKNIKDMISTSKFGEVNGPGDLVNFTFLMSVIKTFF
TNSRLSQFMDQINPLAELTQKRRVSALGIGGINRDRAGIEVRDVHNSHYGRLCPIETPEG
PSIGLITSLSTYAKVNKYGFIQTPFFKVLQQDGKTTLSRDIDYLTADQEKEEIIASAGFV
LDANNSFQDKKIIARSNGETGIFERNQITYADVSPKQIVSVATSSIPFLEHNDASRALMG
ANMQRQAVPLLIPESPIVGTGVEYRAAKDSGCLIIARESGFVTYVDAQKIIITKKPNQTV
SLNGKTLYDTTQEFTYTQAKVLYENNHKEYQAEYTLINFAKSNQDTLVLQKPIVVLGEHI
NEGDILVSGPSTSQGELALGRNVTVAFMTWEGYNYEDAIIMSEELVKHDVYTSIHIDKYE
VQTRELKKGSGQEEITREVPNVGADAIKNLDERGIIIPGSEVKEGDILVGKITPQGNIEP
SPSEKLIQIVIGEKAREYKDSSLRVPFGEGGIVQSVHYFSRKNGDVLPAGVNENIRVFIA
KKRKINEGDKMAGRHGNKGVISRILPKEDLPYMADGTPIDIMLNPLGVPSRMNIGQILEI
HLGMAAKKLGIKVATPVFDGVNDYDLKEIMKEANLEPDGKMVLYDGRTGEPYDSRISVGV
MYMVKLSHMVDDKLHARNVGPYTLVTQQPMGGKVQNGGQRFGEMEVWALYAYGAAHTLQE
ILTVKSDDIVGRNKTYSAIVQGTQLPKPSIPESFRVFIKELQSLGLYVELIKTDTKENEV
NKSLIDYKKEGYN
NT seq
3822 nt
NT seq
+upstream
nt +downstream
nt
atgggttatcataatgtcaaatatggcaaaaaagcacaacgtcgtaattattctaaaaca
atttatgatgttgatttgcccaatttaattgaaattcaaaaccaatcttttgattggttt
ttaaaacacggtattaaagaattattgcaggatttttgtcctattgaaagttacaatggg
gatttaaaaattcactttgatgattattttttaacgcctccaaaatatagcattgaagaa
actaaaattaaagatataagttatgttgcccaattatttgtcaaaactactttagaaaat
gttttaactggcgaaactaaacaaagcaatattttgcttactgaattgcctctaatgact
tctactggcacttttatcatcaatggtactgaaagagtagtagtttctcaaattgtacgt
tccgctagtgtttattttgcaggcaattttgacatcaaactcaatagaaccatttattct
ggacaagtaattccttcacgtggtgcttggatcgaatacgaagaaggttctaaagaaatt
ttgtatgccaaactagatcgttccaaaaaaatccctttgtctaattttatttatgctcta
ggatttgacagcaaagaagcaatcgaaaatgtttttggtaaaagtgctattcttgattct
gtttttgataaagaaactgatatggactcagataacgccttggtagagttgtattctaaa
atccgtcaaggcgaaaaagttcctgtcgacactgccagagatttcatcagaacaagactt
tttgatcaaaaaaaatacgacctggctaaagttggaagatataaatttaacaaaaaacta
gacgttcttactcgagctgaaaacacttatttagcttgtgattttgtcaatcctgaaaac
caagaaataatgattgcacaagatgaacttttaaccaaagaaaaaattgcaatcctgaaa
caaaatcgtcattttttgcttcaagaaatctttgatgctaaacacaatttagaaaacgaa
actgatgaagagattttagcatataaaaaatatcctcaaaaaaatgaattattcaccaaa
actaacatcatcaactctcgtactggtgaagttttagtagctaaagatactttagttaac
gacgatattatcaatcatttaaggcacaatattcacactcttgacgaaaaagtatctaaa
tttttcttaggaactaaagatatttatcaaaaagaagcagaccgtcaaggagtttttaac
gaaattttagaagtctatacttcaaaagacgaatcaggcaagttatataacaaagtcaaa
cttattggaaacgaccaaagagaaaccaaaaaacacattactttatcagatgttattgca
agcattaattattatttgaatctttatgaaaacgtaggcactgttgatgatatcgatcat
ttaggtaatcgtcgtttaagattaattggagaattgttaaaaaaccaatttcgaattggt
cttaccagagctgaaaaaaatatcaaagatatgatttctactagcaaattcggtgaagtt
aacggtccaggtgacctagttaattttacttttttaatgagtgtaatcaaaacttttttc
acaaactcacgtttatcacaattcatggatcaaatcaatcctttagcagaattgacgcaa
aaaagaagggtatcagctctaggtatcggaggaattaatcgtgaccgcgcaggcattgaa
gttcgcgacgtgcacaattcccactacggcagattatgtcccatcgaaactcccgaagga
ccttccattggacttataacatccctttccacttatgccaaagtcaataagtacggtttt
atccaaactcctttttttaaggttttgcaacaagacggaaaaactaccctttcgcgggac
atagactatttaacagctgaccaagaaaaagaagaaattattgcctcagctgggtttgtt
ttggatgccaataattcttttcaagataaaaaaataattgctcgtagcaacggcgaaaca
ggcattttcgaaagaaaccaaataacatatgctgacgtttcccctaaacaaattgtctct
gttgcaacttcttcgattccctttttagaacacaacgatgcttccagagctttaatggga
gctaatatgcaacgtcaagcagtccctttattaattcctgaatcgcctattgtaggaaca
ggtgttgaatatcgcgctgccaaagactcaggttgtttaattattgcccgtgaatcaggg
tttgttacttatgttgatgctcaaaaaataattatcaccaaaaaacccaaccaaactgtt
tcattaaatggtaaaaccctttacgataccacccaagaatttacctatacccaagccaag
gttttatacgaaaacaaccataaagaataccaagctgaatacaccctcatcaactttgcc
aaatccaatcaagatactttagtgttgcaaaaaccgattgtagttttgggagaacatatc
aatgaaggcgatattttagtaagtggaccttctacatctcaaggcgaattagcacttggc
agaaatgttacagtggcttttatgacttgggaaggttataactatgaagatgccatcatt
atgtcagaagaattagtcaaacacgatgtctacacttccatccacattgataaatatgaa
gtccaaactagagaattaaaaaaaggtagcggtcaagaagaaatcactagagaagtccct
aacgtgggcgctgatgctattaaaaaccttgacgaaagaggaattattattcctggttct
gaagttaaagaaggcgatattttagtaggtaaaatcactcctcaaggaaatatcgagcct
tctccttctgaaaaattaattcaaatcgtaatcggtgaaaaagcccgcgaatataaagac
tcttctttaagagttccttttggtgaaggaggcatcgtccaaagtgttcattatttctcc
agaaaaaatggtgatgttcttcctgctggtgtcaacgaaaacatccgtgttttcatcgct
aaaaaacgtaaaatcaacgaaggcgataaaatggcaggacgtcacgggaacaaaggtgta
atttctcgtattttacctaaagaagatcttccttatatggcagacggaactccaattgac
atcatgttaaatcctttaggggttcctagtaggatgaacattggacaaattttagaaatc
catttaggaatggctgccaaaaaattaggcatcaaagtggcaactcctgtttttgatggc
gttaatgactacgaccttaaagaaatcatgaaagaagccaatttagaacctgatggcaaa
atggttttatatgacggacgcaccggcgaaccttatgacagtcgtatttctgtaggagtt
atgtatatggttaaattatctcacatggtagatgacaaactccacgccagaaacgtagga
ccatacactttagttacccaacaacctatgggaggaaaagttcaaaacggtggacaacgc
ttcggtgaaatggaagtatgggcactttatgcttatggagctgctcacaccttacaagaa
attttaacagtcaaaagcgatgatattgtaggtagaaataaaacttatagcgccatcgtt
caaggaactcaactacctaaaccaagtattcctgaaagttttcgagtttttattaaagaa
ttgcaatctttaggattgtacgtagaattaattaaaaccgatactaaagaaaatgaagtt
aataaatccttaattgattacaaaaaggaaggttataattaa
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