Azoarcus sp. KH32C: AZKH_2570
Help
Entry
AZKH_2570 CDS
T02502
Symbol
rtcB
Name
(GenBank) RtcB protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
aza
Azoarcus sp. KH32C
Brite
KEGG Orthology (KO) [BR:
aza00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
aza03016
]
AZKH_2570 (rtcB)
Enzymes [BR:
aza01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
AZKH_2570 (rtcB)
Transfer RNA biogenesis [BR:
aza03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
AZKH_2570 (rtcB)
Prokaryotic type
tRNA splicing ligases
AZKH_2570 (rtcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
BAL24876
LinkDB
All DBs
Position
2902873..2904105
Genome browser
AA seq
410 aa
AA seq
DB search
MRERKMDFQLLEVENGKPIKMWTSGVPVEDEARRQLMATASMPFIYRHIAVMPDVHLGKG
STIGSVIPTRGAIIPAAVGVDIGCGMIAARTTLTAKDLPDNLHRLRTAIEHAVPHGRTTP
RAGRDVGAWERTPAEVDAAWRALLPGFNRITEKYPKLKNTNNYKHLGTLGTGNHFIEVCI
DEEDRVWFMLHSGSRGVGNAIGNLFIELAQVDMREHLANLPDRDLAYFKEGSKHFDDYVE
AVGWAQDYARRNRAVMMHHVVEAARSVIGKAFAADVEAVNCHHNYVQRETHFGADIFVTR
KGAVSARKGELGIIPGSMGAKSYIVRGLGNEEAFCSCSHGAGRVMSRNEAKRRFTVEDQV
RATAHVECRKDRDVIDEIPMAYKDIDRVMEAQRELVEVVHTLRQVVCVKG
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atgcgtgagagaaaaatggatttccagttgctggaagtggaaaacggcaagccgatcaag
atgtggacatcgggcgtgccggtcgaggacgaggcgcgccggcagttgatggcgacggcc
tcgatgcccttcatatacaggcacatcgcggtgatgccggacgtgcatctgggcaaggga
tcgacgatcggcagcgtgatcccgacccgcggtgcgatcattcccgcggcggtcggcgtc
gatatcggctgcgggatgatcgccgcccgcacgacgctgacggcgaaagatctgccggac
aacctgcaccgcctgcggaccgcgatcgaacacgcggtgccgcacgggcgcaccaccccg
cgcgcgggccgtgacgtcggcgcctgggagaggacgccggccgaggtcgatgcggcctgg
cgcgcgctgctgccgggcttcaaccgcatcacggaaaagtatccgaagctgaagaacacg
aacaactacaagcacctcgggacgctcgggaccggcaaccatttcatcgaggtgtgcatc
gacgaggaggaccgcgtctggttcatgctgcattcggggtcacgcggcgtcggcaatgcg
atcggcaacctgttcatcgaactggcgcaggtggacatgcgcgagcacctcgcgaatctg
cccgaccgcgatctcgcgtacttcaaggaaggcagcaagcatttcgacgactacgtcgag
gcggtcggctgggcgcaggactatgcgcggcgcaatcgcgcggtgatgatgcatcacgtc
gtggaggcggcccggtcggtgatcgggaaggctttcgcggcggacgtcgaagccgtgaac
tgccaccacaactacgtccagcgcgaaacacatttcggcgcggatatcttcgtcacgcgc
aagggagccgtttcggcgcgcaagggtgagctcggcatcatcccgggatcgatgggcgca
aaaagctacatcgtccgcggactcggcaacgaggaagcgttctgctcctgcagccacggt
gcgggacgggtgatgagccgcaacgaggcgaagcgacggttcacggtcgaggatcaggtc
agggcgacggcccacgtcgaatgccgcaaggatcgcgacgtgatcgacgagatcccgatg
gcctacaaggacatcgaccgtgtgatggaggcgcagcgcgaactggtcgaagtcgtgcat
acgctgcgccaggtggtgtgcgtgaagggctga
DBGET
integrated database retrieval system
