Azoarcus sp. KH32C: AZKH_4153
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Entry
AZKH_4153 CDS
T02502
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
aza
Azoarcus sp. KH32C
Pathway
aza03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aza00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AZKH_4153 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aza03019
]
AZKH_4153 (rhlE)
Enzymes [BR:
aza01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AZKH_4153 (rhlE)
Messenger RNA biogenesis [BR:
aza03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AZKH_4153 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UTP25_NTPase-like
P-loop_SecA
UvrD-helicase
DUF3025
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BAL26433
LinkDB
All DBs
Position
4583367..4584920
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AA seq
517 aa
AA seq
DB search
MNTPEVSFASLGLAEPLLRAISESGYTRPTPIQAQAIPLVLAGGDLLAAAQTGTGKTAGF
TLPLLHLLSAKPAAVPKAGRPRCLILTPTRELAAQVEESVQTYGKHLPLTSMVMFGGVNI
NPQIAALKKRVDILVATPGRLLDHAGQKTVDLSGVEILVLDEADRMLDMGFIRDIRKVLA
MLPKQRQNLLFSATFSDEIRSLANGLLNNPGCVEVARRNTTTELVEQSVYFVPQKQKRDL
LVHLVKEHDWHQVLVFTRTKHGANRLAEYLGKHGIPAAAIHGNKSQSARTKALSQFKDNS
LPVLVATDIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGSSGKAISFVDSEEKS
YLTSIERLIKRSIERTPVPEFVTHAPDPGDDASRPARDPRQSGRRNDSRTPRQPQTERPA
PRAQSHGANRQPARQGGQAEGGNAANRPARNGEAQGNRNARNGQTNGNHAPRQQEAGANR
APRSAEAPRQQQPRSDAGRRPAPRPALFNAKPGSRSE
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
ttgaacacacccgaagtttctttcgccagtcttggactggcagaaccgctgctgcgcgcc
atttccgaatccggctacacccgcccgacgccgatccaggcccaagcgattcccctcgtg
ctcgccggcggcgacctgctcgccgcagcgcagaccggcaccggcaagaccgccggcttc
acgctgccgctactgcacctcctttccgccaagcccgccgccgtcccgaaagccggacgc
ccgcgctgcctgatcctgaccccgacgcgcgaactcgccgcgcaggtcgaggaatcggtg
cagacctatggcaagcacctgccgctaacctcgatggtcatgttcggcggcgtcaacatc
aatccgcagatcgccgcgctgaagaagcgcgtcgatatcctcgtcgcgacccccggccgt
ctgctggaccatgctggccagaagacggtcgatctgtcgggcgtcgagatcctcgtcctt
gacgaagccgaccgcatgctggacatgggcttcatccgcgacatccgcaaggtgctcgcg
atgctgccgaagcagcgccagaacctgttgttctcggcgaccttctcggacgagatccgg
tcgctcgccaacggcctgctgaacaacccgggctgcgtcgaagtggctcgccgcaatacg
accaccgaactggtcgagcagtccgtgtatttcgtgccgcagaagcagaagcgcgacctg
ctggtgcatctggtcaaggagcacgactggcaccaggtgctggtcttcacccgcaccaag
cacggcgcgaaccggctggccgaatacctcggcaaacacggcatcccggccgcggcgatc
cacggcaacaagagccagtcggcgcgcaccaaggcgttgtcgcaattcaaggacaactcg
ctgccggtgctcgtcgcgaccgacatcgcggcgcgcgggctggacatcgaccaactaccg
caggtcgtgaacttcgagctgccgaacgtgccggaagactacgtgcaccgcatcggccgc
accggtcgtgccggttccagcggcaaggcgatctccttcgtcgacagcgaggagaagtcc
tatctgacgtcgatcgagcgcctgatcaagcgcagcatcgagcgcacgccagtgccggaa
ttcgtgacgcacgcgcccgatccgggcgacgacgcctcgcgcccggcacgcgatccgcgc
caatcgggtcgtcgcaacgacagccgcacgccgcgccagccgcagacggaacgtccggcc
ccgcgcgcgcaaagccacggcgcgaaccgccagccggcacggcagggcggacaggccgag
ggtggcaatgctgcgaaccgtccggcccgcaatggcgaagcccaaggtaatcgcaatgcg
cgcaacggccagacgaacggcaaccacgcgccgcgccagcaggaagccggcgccaaccgg
gccccgcgttcggccgaggcaccgcgtcagcagcagccccgctcggacgccggacgccgt
ccggcaccccgcccagcgctcttcaacgcgaagccgggttcgcgcagcgaataa
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