Azorhizobium caulinodans: AZC_1683
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Entry
AZC_1683 CDS
T00609
Name
(GenBank) putative hydrolase of the metallo-beta-lactamase superfamily
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
azc
Azorhizobium caulinodans
Pathway
azc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
azc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AZC_1683
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
azc03019
]
AZC_1683
Messenger RNA biogenesis [BR:
azc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AZC_1683
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RMMBL
RNase_J_C
Lactamase_B_2
Lactamase_B
Motif
Other DBs
NCBI-ProteinID:
BAF87681
UniProt:
A8I428
LinkDB
All DBs
Position
1925139..1926806
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AA seq
555 aa
AA seq
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MADNNELVFAPLGGVGEIGMNLGLYGIGPRKQRQWLIVDLGMSFAGEEAPGVDLVMPDIR
FLESVKDRIAGLVLTHGHEDHVGAMLDLWPRIGCPVYTTRFTAALLDAKRLQEPGAPKIP
IEVVRSGGRAQIGPFEVEFVPVAHSIPDSHALAIRTAAGLVLHTGDWKLDPTPVVGHVTD
IARLQALGDEGVRAMICDSTNAIRDGVSPSEADVAATLRDVVAKAKYRVAFTTFSSNVAR
VRAIAEAAYANDREVVVVGRAMERVIGVAREQGMLDGLPAFRGADAFGFLPRDKVVAILT
GSQGEPRAALSRIATDDHPEIALSHGDLVVFSSRTIPGNEKVVNTVINGLVKRGIKVMTD
KDGLVHVSGHPRRGELEQMYKWVRPQVSVPVHGEPLHLTEHAALAKALGVPEVVSCADGH
VIRLAPGHAERVEDVPYGRLYKDGRLLIPDSARTIPERRRLAYVGIVSVALAVDNRGNLV
GDPSVEITGIPERGEGGIDFLDLILDTVVTTAEGLPKARRRDPDAMSDSIERAVRGAVNG
AWGKKPVCHVHIVEV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atggctgacaacaacgagctcgtcttcgcgcctctcgggggggtgggcgagatcggcatg
aatctcggcctctacgggatcggaccgcgcaagcagcgccagtggctcatcgtcgatctc
ggcatgagcttcgcgggcgaggaggcgccgggcgtcgatctcgtcatgcctgacatccgt
ttcctggagagcgtcaaggatcgcattgccggtctcgtgctgacccatggacacgaggac
catgtgggcgccatgctggacctgtggccccgcatcggctgcccggtctatacgacccgc
ttcaccgccgctttgctggacgccaagcgcctgcaggagcccggcgcgccgaagatcccg
atcgaggtggtccgctccggcggtcgggcccagatcggtcccttcgaggtggagttcgtg
cctgtcgcgcactccatccccgacagccacgccctcgccatccgcaccgccgccggcctc
gtgctgcacaccggcgactggaagctcgacccgacccccgtggtgggccatgtgacggac
attgcccgcctccaggccctcggcgacgagggcgtgcgggcgatgatctgcgattccacc
aacgccatccgcgacggcgtctcgccatccgaggcggacgtggcggcgacgctgcgggac
gtggtcgccaaggcgaagtatcgcgtcgccttcaccaccttctcctccaacgtcgcccgc
gtgcgcgccatcgcggaagccgcctatgccaatgaccgcgaggtggtggtggtgggccgc
gccatggagcgcgtcatcggggttgcccgcgagcagggcatgctggacggcctgccggcc
ttccggggtgccgatgccttcggcttcctgccccgcgacaaggtggtggccatcctcacc
ggcagccagggcgagccgcgcgccgcgctgagccgcatcgccaccgacgaccatccggag
atcgccctgtcccatggcgacctcgtggtcttctcctcacgcaccattcccggcaacgag
aaggtggtgaacacggtcatcaacggcctcgtgaagcggggcatcaaggtgatgaccgac
aaggacggcctcgtccacgtctccggccatccgcggcgcggcgaactggagcagatgtac
aagtgggtgcgcccgcaggtttccgtgccggtgcatggcgagccgctgcatctgaccgag
catgccgcgctcgccaaggcgctcggcgttccggaggtggtctcctgcgccgacggccat
gtgatccgcctcgcgcccggccatgccgaacgggtggaggacgtgccttacgggcgcctc
tacaaggacggccgcctgctgatccccgacagcgctcgtacgattcccgagcgccggcgc
ctcgcttatgtgggcatcgtctcggtggcgctcgccgtggacaatcgcggcaacctcgtg
ggcgatccctcggtggagatcaccggcattcccgagcggggggaggggggcatcgatttc
ctcgacctcatcctcgatacggtggtgaccaccgccgagggcctgcccaaggcgcggcgt
cgcgatcccgatgccatgtccgattccatcgagcgggccgtgcgcggggcggtcaatggc
gcgtggggcaaaaagccggtttgccacgtccatatcgtcgaggtttga
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