Azoarcus sp. DN11: CDA09_02810
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Entry
CDA09_02810 CDS
T05691
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
azd
Azoarcus sp. DN11
Brite
KEGG Orthology (KO) [BR:
azd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
azd03019
]
CDA09_02810 (hrpA)
Enzymes [BR:
azd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CDA09_02810 (hrpA)
Messenger RNA biogenesis [BR:
azd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CDA09_02810 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
AAA_22
DEAD
AAA_19
AAA_30
AAA_25
HA2_N
nSTAND3
T2SSE
NACHT
AAA_23
PhoH
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
AYH42329
LinkDB
All DBs
Position
629584..633672
Genome browser
AA seq
1362 aa
AA seq
DB search
MTATDSRHADARRRGDDFSDCLTADRPRLRRLVRDLGRNQGARRERLQADLDALHARSRA
ALAERRARLPQPDFPAELPVTQRRDEIAEAIAAHQVVIVCGETGSGKTTQLPKICLALGR
GAAGLIGHTQPRRLAARATATRIAQELKSELGRAVGYKIRFTDRLSESSCIKLMTDGILL
AETQGDPSLAAYDTLIIDEAHERSLNIDFLLGYLRTLLPRRPDLKVIVTSATLDADRFAR
HFAGADGKPAPVIEVSGRLYPIELRYRPVESDDAPTQESRRPGADRRKDRDLYDALVDAV
DEAHRSGPGDTLVFLPGEREIREAAEALRKAHHASGTEILPLYARQSAQEQARVFAPGRG
RRVVLATNVAETSLTVPGIRYVVDTGLARVKRYSHRNKVEQLQVEKIAQSAAKQRAGRCG
RVMDGVCFRLYDEDDLGKRPAHTDPEILRSSLAGVILRMKSLRLGAVEDFPFIDAPLPRM
IADGYQLLTELGAVTDDDARELTPSGVELAKLPVDPKIGRMILAARDRACLTEVLVIAAA
LSTQDPRERNPESPGAADQAHARFRGGESDQRSEFLWYWNLWKAWGEVLRHETGSKQKAW
AKQHHLSYMRLREWRDVHTQLHTLCTEHGWKENQQPAHYDAIHKALLAGLLGHVGCKIED
ASGPQAGSYLGARGIKFWPHPGSAIAKKAGKWIVSAELVDTSRLFGRCLAKIEPEWLEEV
GAHLVKRQVFEPHWSKASGAVRAWERGTLHGLVLYPKRGIGYRDTDPELCRELLIREGLV
QGEIAEGPARGMPFLQHNRRLVAEIERLEHKSRRPDVLVDEELIHAFYDAKLPADIVDLA
SFDAWRKQAEKAEPKLLYLSRDQLMRHEAEGITTDRFPANFEVLGQKLKLTYLHQPGEAD
DGVTLTVPLAMLNQIPANRCEWLVPGLLEEKVAALLRTVPQKHRHRLQPVAESATAFMEH
HEAGEWDADEPLLRALQRFVEDRVSLKLPMESFRAENLHPHCYMNFRVIDEHGRVLGQSR
NLAELRTRLRDQVAERFRGARITMPETAAPKTATPTPPPVATKGQGAPAKTAVEPASAQL
AGFTAWTFGPLPELLEVKVAGREVIGFPALHDDGDSVSLRPHDTPEEAAKVHRKGLTRLF
VLTLKDQVRAIERLPGLRDLALAFIPFGTEAELKAQLVAATLERTCLLDPLPTDAPSFEQ
RCTEAKSRITLIAQEFMRLATTLIAEHAALQKRLTGMKGFPEAAADLQSQVRELMPKDFL
VAYPWERLAHFPRYLKAAGVRLDKLRNNPARDAQLQADWRSLAQPFEREHLAKCKAGVSD
PSLDEFRWLLEELRVGLFAQELRTPMPMSVKRLQKIWDARPR
NT seq
4089 nt
NT seq
+upstream
nt +downstream
nt
ttgactgcaaccgactctcgccacgccgacgcgcgccggcgcggtgacgatttttccgat
tgcctcaccgccgaccgtccgcgcctgcggcgtctcgtgcgtgacctcggccgcaaccag
ggcgcaaggcgcgagcgtctgcaagcggatctcgatgccctgcacgcccgctcgcgtgcc
gcgctcgccgaacgccgggcgcgcctgccgcagcccgacttccccgccgaactccccgtc
acgcaaaggcgcgacgaaatcgccgaagcgatcgccgcccatcaggtcgtcatcgtctgc
ggcgaaaccggctccggcaagaccacccagctccccaagatctgcctcgcgctgggccgt
ggagccgccggcctcatcggccacacccagccgcggcggcttgccgcccgcgcgaccgcg
acccgcatcgcccaggagctgaaatccgaacttggccgggccgtcggctacaagattcgc
ttcaccgaccgtctcagcgaatcgagctgcatcaagctgatgaccgacggcatcctgctc
gccgagacgcagggcgatccctcgctcgccgcctacgacacactgatcatcgacgaggcc
cacgagcgcagcctcaacatcgacttcctgctcggctacctccggacgttgctgccgcgc
cgccccgacctcaaagtcatcgtcacctccgcgacgctcgacgccgaccgcttcgcgcgc
cacttcgccggcgccgacggcaagcccgcgccggtgatcgaagtctccggtcgcctctac
ccgatcgagttgcgctaccgcccggtcgaaagcgacgacgcgcccacgcaggagtcccgc
cgtcccggcgccgaccgccgcaaggaccgcgacctctacgatgccctcgtggacgctgtc
gacgaagcccaccgcagcggccccggcgacaccctggtgttcctccccggcgagcgcgaa
atacgcgaagccgccgaagcgctgcgcaaggcccaccacgcctccggcaccgagatcctg
ccgctctacgctcgccagtccgcgcaggagcaggcgagggtgttcgcccccggccgcggc
cgccgcgtcgtcctcgcgaccaacgtcgccgaaacctcgctcaccgtccccggcatccgc
tacgtcgtcgacaccggccttgcgcgtgtaaaacgctactcgcaccgcaacaaggtcgag
caactgcaggtcgagaagatcgcccagtccgccgcgaagcagcgcgctggccgctgcggc
cgcgtcatggatggcgtctgcttccgcctctacgacgaggacgacctcggcaagcgtccc
gcgcacaccgaccccgagatcctgcgctcctcgctcgccggcgtgatcctgcgcatgaag
tcgctgcgcctcggtgccgtcgaagacttccccttcatcgatgcgccgctgccgcgcatg
atcgccgacggctaccaactcctcaccgagctcggtgccgtcacggacgacgatgcgcgc
gaactcacgccctccggcgttgaactcgcgaagctcccggtcgaccccaagatcggccgc
atgatcctcgccgcccgcgaccgcgcctgcctcaccgaagtactggtcatcgccgccgcc
ctgtcgacccaggatccacgcgaacgcaaccccgaaagccccggcgccgccgaccaggcg
cacgccaggttccgcggcggcgagagcgaccagcgctccgaattcctctggtactggaac
ctctggaaagcctggggcgaagtccttcgccacgagaccggcagcaagcagaaggcgtgg
gcgaagcaacaccacctttcctatatgcgcctgcgcgaatggcgcgacgtgcacacccag
ctccacaccctgtgcaccgaacacggctggaaggaaaaccagcagcccgcccactacgac
gcgatccacaaggcgctgctcgccggactcctcggccacgtcggctgcaagatcgaagat
gccagcggcccgcaggccggcagctacctcggcgcccgcggcatcaagttctggccgcat
cccggctccgcgattgccaagaaagccggcaaatggatcgtcagcgccgaactcgttgac
acctcgcgcctcttcggccgctgtctcgcgaagatcgagcccgaatggctcgaagaagtc
ggcgcccacctcgtcaagcgccaggtcttcgagccccactggtccaaagcctccggcgcc
gtgcgcgcctgggagcgcggcacgctgcacggcctcgtcctctacccgaagcgcggcatc
ggctatcgcgataccgaccccgagctgtgccgcgaactcctcattcgcgaaggcctcgtc
cagggtgagatcgccgaaggccccgcgcgcggcatgcccttcctgcaacacaaccgccgc
ctcgtcgccgagatcgaacgcctcgaacacaaatcgcgccgccccgacgtgctcgtcgac
gaagaactgatccacgccttctacgacgccaagctccccgccgacatcgtcgatctcgcg
agcttcgacgcgtggcgcaaacaagccgaaaaggccgagcccaagctgctgtatctgagc
cgcgaccagctcatgcgccacgaggccgaaggcatcaccaccgaccgcttccccgcgaac
ttcgaagtcctcggccagaagctcaaactcacctacctgcaccaacccggcgaagccgac
gacggcgtcacgctcaccgtcccgctcgcgatgctcaaccagatccccgcgaaccgctgc
gaatggctcgtgcccggcctgctggaagaaaaggtggcggcgctgctgcgcaccgtcccc
caaaagcaccgccaccgcctgcaacccgtcgccgaaagcgccaccgccttcatggaacac
catgaggccggcgaatgggatgccgacgaaccgctcctgcgcgccctgcaacgcttcgtc
gaggatcgcgtctcgctcaagctcccgatggagtccttccgcgcggaaaacctccatccg
cactgctacatgaacttccgcgtgatcgacgagcacggccgcgtgctcggccagtcgcgc
aacctcgccgagctgcgcacgcgactccgcgatcaggtcgccgagcgattcaggggcgca
cggatcacgatgccggaaacggccgcgccgaagaccgcaacgccaacgccgccacccgtg
gctacgaaagggcagggcgctccagcgaaaaccgctgtcgaacctgcctccgcccaactt
gccggcttcaccgcctggaccttcggccctctgcccgaactcctcgaagtcaaagtcgcc
ggccgcgaagtcatcggtttccccgcactgcacgacgacggcgacagcgtctcgctgcgc
ccccacgacacccccgaagaagccgccaaggtccaccgcaaaggcctcacgcgcctcttc
gtcctgaccctgaaggaccaggtccgcgccatcgaacgtctgcccggcctgcgtgacctc
gcgctcgccttcatccccttcggcaccgaagccgaactcaaggcccaactcgtcgccgca
accctcgaacgcacctgcctgctcgacccgctgccgaccgacgccccaagcttcgagcaa
cgctgcaccgaagccaaatcccgcatcaccctcatcgcgcaggaattcatgcgcctcgcg
accacgctgatcgccgagcacgccgcgctgcagaaacgcctcactggcatgaagggcttc
cccgaagcggccgccgacctccagagccaggtccgcgaactcatgcccaaggacttcctc
gtcgcctacccctgggaacgcctcgcccacttcccgcgctacctcaaggccgccggcgta
cgcctcgacaagctgcgcaacaatcccgcacgcgacgcccagctgcaggccgactggcgc
agcctcgcccagcccttcgagcgcgaacatctcgccaagtgcaaggccggcgtcagcgac
ccgagtctcgacgagttccgctggctcctcgaagaactgcgcgtcggcctcttcgcccag
gaactcaggactcccatgccgatgtcggtcaagcgcctgcaaaaaatctgggacgcccgc
ccccgctaa
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