Azoarcus sp. DN11: CDA09_03050
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Entry
CDA09_03050 CDS
T05691
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
azd
Azoarcus sp. DN11
Pathway
azd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
azd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CDA09_03050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
azd03019
]
CDA09_03050
Enzymes [BR:
azd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CDA09_03050
Messenger RNA biogenesis [BR:
azd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CDA09_03050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Cas3-like_C_2
Utp25_C
CMS1
Motif
Other DBs
NCBI-ProteinID:
AYH42371
LinkDB
All DBs
Position
complement(682767..684224)
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AA seq
485 aa
AA seq
DB search
MSFADLGLIPELLRAVADTGYTAPTPIQQQAIPVVLAGRDVMGGAQTGTGKTAGFTLPLL
QRLSRHASTSTSPARHPVRALILAPTRELAMQVFESVKTYSKHIPLRSTCIYGGVDMKPQ
IQELRNGIEIVVATPGRLLDHVQQRTIALNQVEMLVLDEADRMLDMGFIPDIRRILDLLP
ASRQSLLFSATFSDEIKKLADQMLKEPQLIEVARRNTVSETITHRVHPVSAGLKRNLLVH
LLRHEPDTQALVFVATKLACGRLAHFLERHEIAADAIHGDKGQAQRTETLEAFKSGKLRV
LVATDVAARGLDIDDLPSVINFELPHTAEDYVHRIGRTGRAGRHGHAVSLVSAEEKHLLV
EIEKLIKLQIPQEAVPGFDPEPDFHESGARRGRRAPAAKDAEPSREPANGSRAAAPARNN
DARRRKSMIAPDGFDFSKPYEPTQPIAAAAGASLQATEPAIDKRSIAPRRPARPIAVLLG
GLGRK
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgagcttcgccgacctcgggctgatccccgagctgctacgcgctgtagccgacaccggt
tacaccgcccccaccccgatccagcagcaggccattcctgtcgtgttggccggccgcgac
gtgatgggcggcgcgcagaccggcaccggcaagacggccggcttcacgctgccgctgctg
cagcggctttcccgccacgcgagcacttcgaccagccccgcccgccatccggtgcgcgcg
ctgatcctcgcgccgacgcgcgagctggcgatgcaggtgttcgagtcggtgaagacctac
agcaagcacatcccgctgcgcagcacctgcatctacggcggcgtcgacatgaagccgcag
atccaggaactgcgcaacggcatcgagatcgtcgtcgcgacgcccgggcgcctgctcgac
cacgtgcagcagcggacgatcgcgctgaaccaggtcgagatgctcgtgctggacgaagcc
gaccgcatgctggacatgggcttcatccccgacatccgccgcatcctcgacctgctgccg
gcgtcgcgccagagcctgctgttctcggcgaccttctcggacgagatcaagaagctcgcc
gaccagatgctcaaggaaccgcagctgatcgaagtcgcccgccgcaacacggtgtcggag
acgatcacgcaccgcgtgcatccggtctccgccggcctcaagcgcaacctgctcgtgcac
ctgctgcggcacgaaccggacacgcaggcattggtgttcgtcgcgaccaagctcgcctgc
ggccgtctcgcccacttcctggaacgccacgagatcgccgccgacgcgatccacggcgac
aagggccaggcacagcgcaccgagacgctggaagcgttcaagtccggcaagctgcgcgtc
ctcgtcgccaccgacgtcgccgcgcgcggactggacatcgacgacctgccctcggtcatc
aatttcgaactgccgcataccgccgaggactacgtgcaccgcatcggccgcaccggtcgc
gcgggccgccatggccacgcggtatcgctggtgagcgctgaagagaagcatctcctcgtc
gagatcgagaagctcatcaagctgcagattccgcaggaagccgtgccgggcttcgatccc
gaacccgacttccatgaatccggtgcccgcaggggccggcgtgccccggctgccaaggac
gccgaaccgtcgcgcgaaccggcgaacggcagccgtgccgccgcaccggcccgcaacaac
gacgcgcgccgccgcaagtcgatgatcgcgccggacggattcgacttcagcaaaccctac
gaaccgacccagccgatcgcagcagcggcgggcgccagtctgcaggcgacggaaccggcg
atcgacaagcggagcatcgcgccgcggcgcccggcacgccccatcgccgtcctgctcggc
ggactgggccgcaaataa
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