Azoarcus sp. DN11: CDA09_15335
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Entry
CDA09_15335 CDS
T05691
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
azd
Azoarcus sp. DN11
Pathway
azd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
azd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CDA09_15335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
azd03019
]
CDA09_15335
03009 Ribosome biogenesis [BR:
azd03009
]
CDA09_15335
Enzymes [BR:
azd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CDA09_15335
Messenger RNA biogenesis [BR:
azd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CDA09_15335
Ribosome biogenesis [BR:
azd03009
]
Prokaryotic type
rRNA processing factors
CDA09_15335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AYH44740
LinkDB
All DBs
Position
3332049..3334922
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AA seq
957 aa
AA seq
DB search
MKRMLFNATQAEELRVAIVDGQKLIDLDIESAAKEQRKSNIYKAVITRIEPSLEAAFVDY
GSERHGFLPFKEISRSYFAPGVDAGKARIQDALKEGQELIVQVEKDERGNKGAALTTYIS
LAGRYLVLMPNNPRGGGVSRRVEGDERSELREVMDQLEVPQGMSLIARTAAIGRNAEELQ
WDLNYLLQLWRAIDGAAQSQSGAFLIYQEGSLVIRAIRDYFQPDIGEILIDTDDVHEQAQ
QFMAHVMPGNVNRVKRYSDDVPLFSRFQIEHQIESAYSRQVGLPSGGAVVIDHTEALVSI
DVNSGRSTKGADIEETAFRTNLEAAEEIARQLRLRDLGGLIVIDFIDMESQKNQREVENR
LRDALRHDRARVQTGKISRFGLLELSRQRLRPALAETSYIPCPRCSGTGHIRSTESSALH
ILRILEEEAMKENTGAVHLQVPVDVATFLLNEKRSDIAHIEYRHKIQLIIIPNRHLETPH
HEIIRLRHDQLNLEELTLASYQMVGKPPAEVDLRLPTKDDKKPARAEAVVKGIAPAQPAP
VVEPKPEAAPAPAAQPGLIARLFAWLRGEKAAPAPQPAEEAQPKREPRPRGERGEGRRGG
NGRNRREGQRGEREESAQAARSGGRSERPERAERPERAERPERAERPERAERPERAERTE
RAEGGEGRARQGRAPRQPKAVEAAEGAIAQPVVDTAAAAAAPGVTDAPVAPAGEEGAPEK
RRRRSRGRRDRRTGEEQGALAASADAEAASETAQPEQPAEAVATIAAETQPIVVAEAEAP
LPVVASPAEAVPAGIEEAPMPVLAAATAAVEPAAGEQPAEAPQAVEPAEMAAEPVMQAEE
ATPAPEAVVVTEVEAPAPAEAPVVIAPTVAAESVAPVEPVVVNKVSEAARAPSAPIDLGS
SLTESGLVMIETSREKVQAFAEAHAEEAPARPLGRRPRPQSVIADEPLQQVETHKPH
NT seq
2874 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcatgcttttcaatgcgacgcaggccgaggaactgcgcgtcgcaatcgtggat
ggtcagaaactgatcgacctcgatatcgaatcggccgccaaggaacaacgcaagagcaac
atctacaaagccgtcatcacccgcatcgagcccagcctcgaagcggcgttcgtcgattac
ggctcggaacggcacgggttcttgccgttcaaggaaatttcccgctcctacttcgccccg
ggcgtggatgccggcaaggcacgcatccaggatgcgctgaaggaagggcaggagctgatc
gtccaggtcgagaaggacgagcgcggcaacaagggcgccgcgctcaccacctacatctcg
ctggccggacgctacctcgtcctgatgccgaacaacccgcgcggcggcggcgtgtcgcga
cgcgtcgagggtgacgagcgcagcgagctgcgcgaagtcatggaccagctcgaagtgccg
cagggcatgagcctgatcgcacgcacggcggcaatcggacgcaacgccgaggaactgcag
tgggacctcaactacctgctgcaactgtggcgcgccatcgacggtgctgcgcagtcgcag
tcgggcgcattcctgatctaccaggaaggcagcctcgtgatccgagcgatccgtgattac
ttccagccggatatcggcgagatcctgatcgataccgacgacgtgcacgaacaggcgcag
cagttcatggcgcacgtgatgccggggaacgtgaaccgcgtgaagcgttacagcgacgac
gtgccgctgttctcgcgcttccagatcgagcaccagatcgagtcggcctactcgcgccag
gtgggcctgccgagcggcggcgcggtcgtgatcgaccacactgaagccctcgtgtcgatc
gatgtgaactccgggcgctcgaccaagggcgcggacatcgaggaaacggccttccgcacc
aacctcgaagcggccgaggagatcgcgcgccagcttcgcctgcgtgacctgggcggcctg
atcgtcatcgacttcatcgacatggagtcgcagaagaatcagcgcgaggtcgaaaaccgg
ctgcgcgacgcactgcggcatgaccgcgcgcgagtccagacggggaagatcagccgcttc
ggcctgctcgaactgtcgcgccagcgcctgcgccccgccctcgcggaaaccagctacatc
ccctgcccgcgctgcagcggcaccggccatatccgcagcaccgagtcgtcggcgctgcac
atcctgcgcatcctcgaagaggaggcgatgaaggaaaatacgggcgccgtgcatctgcag
gtgcccgtggatgtcgcaaccttcctgctcaacgagaagcgctccgacatcgcgcatatc
gagtaccggcacaagatccagctgatcatcatccccaaccgccatctcgagacgccgcac
cacgagatcatccgtctgcgccacgatcagctgaacctggaagaactcacgttggcgagc
taccagatggtcggcaagcccccggccgaagtcgatctgcgcctgccgaccaaggacgac
aagaagcccgcgcgggccgaggcggtggtgaagggtatcgcccccgcacaacccgcgccg
gtcgtggagccgaagcccgaggcagcgcccgctccggccgctcagccgggcctgattgcc
cgcctgttcgcctggctgcgtggcgaaaaggctgcgcccgccccgcaacccgccgaggaa
gcacaacccaagcgcgaaccgcgcccgcgcggcgagcgcggcgaaggccgccgcggcggc
aatgggcgcaaccgtcgtgaaggtcagcgcggcgaacgcgaggaatccgcacaggccgcc
cgcagcggcggacggagcgaacggcccgagcgcgccgagcgaccggagcgcgccgagcga
ccggagcgtgcggaacggccggaacgcgcagaacgccccgagcgcgcggaacgcacggag
cgggccgaaggcggcgaaggccgcgcccggcaagggcgcgcaccacgtcagcccaaggcc
gtcgaggcggcagaaggcgcgatcgcacagccggtcgtcgacacggccgctgcagcggct
gccccgggagtgaccgacgcaccggtcgcaccagccggcgaggaaggcgcgcccgagaag
cgtcgccgtcgcagccgtggtcgccgcgaccgccgtaccggtgaggagcaaggcgcactc
gctgcaagcgccgacgcagaagccgcaagtgagacggcccagcccgagcagcccgcggag
gctgttgccaccatcgccgcggaaacccaaccgatcgtcgtcgcggaagccgaagccccc
ctgccagtcgttgcgagcccggccgaagccgttcccgcggggatcgaggaggcaccgatg
ccggttcttgctgccgcgactgcggccgtcgagccggccgctggcgaacagcccgccgaa
gctccgcaagccgttgagcccgcggaaatggctgccgagccggtcatgcaagccgaggaa
gccaccccggcccccgaggccgttgtcgtgaccgaggtcgaggcgccggcccctgcagaa
gctcctgtcgtcatcgcaccgaccgtggcggccgaatcggttgcccccgtcgagccggtc
gtggtcaacaaggtgtcggaagccgctcgtgcgccgtccgcccccatcgaccttggcagc
tcactgaccgaaagcgggctggtgatgatcgagaccagccgcgagaaggttcaggccttt
gccgaagcgcacgccgaagaggcccctgcccgcccgctcggccgacgcccccgcccgcag
agcgttatcgcggacgagccgttgcagcaggtggaaacccacaagccgcactga
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