Azoarcus sp. DN11: CDA09_19555
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Entry
CDA09_19555 CDS
T05691
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
azd
Azoarcus sp. DN11
Pathway
azd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
azd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CDA09_19555 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
azd03021
]
CDA09_19555 (rpoC)
03400 DNA repair and recombination proteins [BR:
azd03400
]
CDA09_19555 (rpoC)
Enzymes [BR:
azd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CDA09_19555 (rpoC)
Transcription machinery [BR:
azd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CDA09_19555 (rpoC)
DNA repair and recombination proteins [BR:
azd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CDA09_19555 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
AYH45551
LinkDB
All DBs
Position
complement(4204472..4208698)
Genome browser
AA seq
1408 aa
AA seq
DB search
MKSLLADLFKQTLPNEDQFDAITIGLASPDKIRSWSYGEVKKPETINYRTFKPERDGLFC
AKIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLSKVRRERMAHIELASPTAHIWFLK
SLPSRLGMVLDMTLRDIERVLYFEAFVVVEPGMTPLNRGQLLTEDDYLAKVEEYGDEFDA
LMGAEGIRGLLRTLDIQLEIEKLRGELETTNSEAKIKKFSKRLKVLEAFQQSGIKPEWMI
LEVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRM
LQEAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVG
PQLKLHQCGLPKLMALELFKPFIFNKLELMGLATTIKQAKKMVEGQEPVVWDILEEVIRE
HPVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCVAFNADFDGDQMAVHVPLSLEAQM
EARTLMLASNNVLSPANGEPIIVPSQDIVLGLYYATREGVNVLGEGMALSDVGELKRAYE
SKQLSLHARVSVRLKEIEVGADGERREKITRYNTTAGRAMLSEILPPGLPFSVIDKPLKK
KEISRLINASFRRCGLKETVVFADKLMQFGFRLATRAGISIAVKDMLVPNLKDSLIHAAE
QEVKEIARQYTSGLVTDGERYNKVVDIWGRAGDQVAKAMMDQLGQEDVVNRKGETVKQES
FNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITTNFREGLNVLQYFISTHG
ARKGLADTALKTANSGYLTRRLVDVTQDLVVTEDDCGTRDGFVMKALIEGGEVIEPLRDR
ILGRVCAEDIVNPDSQETVMEAGTLLDENAVDLIESLGIDEVKVRTALTCETRYGLCGKC
YGRDLGRGNLVNVGEAVGVIAAQSIGEPGTQLTMRTFHVGGAASRAAAASGVESKSAGTI
RFAGNMRYVSNAKGEKVIIARSAEIVVADDMGRERERHKLPYGATLLVDDGAAIKAGVML
ATWDPHTRPIVTEYAGTVKFENVEEGATVAKQIDEVTGLSTLVVIDGKRKAGSSSKGVRP
QVKLLDESGEEVKIAGTDHSVAITFQVGSLITVKDGQVVSVGDILARIPQESAKTRDITG
GLPRVAELFEARPPKDAGVLAEYTGTVSFGKDTKGKQRLVITEADGTAHEFLIPKDKHVM
VHDGQVVNKGELIVDGPADPHDILRLQGIEALARYIIDEVQDVYRLQGVKINDKHIEVIV
RQMLRRVVITDAGDTKFIREEQVERSEVLDENDRVEADGKLAGHYQNILLGITKASLSTD
SFISAASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGMAYHRNRRAQSAGED
LAAEHAWAAMQEQPSEVPDGVSQDVQAG
NT seq
4227 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagcctgctcgctgacctgttcaagcaaaccctgccgaacgaagaccagttcgat
gcgatcacgatcggcctcgcgtcgccggacaagatccgctcgtggtcctacggcgaggtc
aagaagcccgagaccatcaactatcgcaccttcaagcccgagcgcgacggcctcttctgc
gccaagatcttcgggccggtgaaggattacgaatgcctgtgcggcaagtacaagcggctc
aagcatcgcggcgtgatctgcgagaagtgcggcgtcgaagtgacgctgtcgaaagtgcgc
cgtgagcgcatggcgcacatcgagctcgccagcccgaccgcccacatctggttcctgaag
agcctgccgagccgtctcggcatggtgctcgacatgaccctgcgcgacatcgagcgcgtg
ctgtacttcgaagcctttgtcgtcgtcgagccgggtatgaccccgctcaaccgtggtcaa
ctcctgaccgaggacgactacctcgcgaaggtcgaggagtatggcgacgaattcgacgcg
ctgatgggcgccgagggcatccgcggcctgttgcgcacgctcgacatccagctcgagatt
gagaagctgcgcggggaactcgagaccaccaactccgaagccaagatcaagaagttctcg
aagcgcctcaaggtgctcgaagccttccagcagtccggcatcaagcccgaatggatgatt
ctcgaggtcctgccggtgctgccgccggacctgcgtccgctggtgcccctggatggcggc
cgtttcgcgacctccgacctgaacgacctctatcgtcgcgtcatcaatcgcaacaaccgc
ctgaagcgcctgctggagctgaaggcgccggaaatcatcgtgcgcaacgagaagcgcatg
ctgcaggaagccgtcgactcgctgctcgacaacggccgccgcggcaaggcgatgaccggg
gcgaacaagcgcccgctcaagtcgctcgccgacatgatcaagggcaagggcggtcgcttc
cgtcagaacctgctgggcaagcgcgtcgactactcgggccgttcggtcatcgtcgtcggt
ccgcagctgaagctccatcagtgcggcctgccgaagctgatggcgctcgagctcttcaag
cccttcatcttcaacaagctggagctgatggggctggcgacgaccatcaagcaggcgaag
aagatggtcgagggccaggagccggtggtctgggatatcctcgaagaggtcatccgcgag
catccggtcatgctgaaccgcgcgccgaccctgcaccgcctcggtatccaggcgttcgag
ccggtgctgatcgaaggcaaggcgatccagctgcacccgctcgtctgcgtcgcgttcaac
gccgacttcgacggcgaccagatggccgtccacgtgccgctgtcgctcgaggcgcagatg
gaagcacgcacgctgatgctcgcgtcgaacaacgtgctgtcgcccgcgaacggcgagccg
atcatcgtcccgtcgcaggacatcgtcctgggcctgtactacgcgacccgcgaaggcgtc
aacgtgctcggcgaaggcatggccctgtccgacgtgggcgagctcaagcgcgcctacgag
tcgaagcagctgtcgctccacgcccgtgtctcggtccgcctgaaggagatcgaagtcggc
gccgacggcgaacgccgcgagaagatcacccgctacaacacgacggccggccgcgccatg
ctgtccgagatcctgccgccgggccttcccttcagcgtgatcgacaagccgctgaagaag
aaggaaatttccaggctgatcaacgcgtcgttccgtcgttgcggcttgaaggaaaccgtc
gtgtttgccgacaagctgatgcagttcggcttccgtctggcgacccgcgccggtatctcg
atcgcggtcaaggacatgctcgtcccgaacctgaaggattcgctgatccacgccgccgag
caggaagtgaaggaaatcgcccggcagtacacgtcgggccttgtgaccgacggcgagcgc
tacaacaaggtggtcgatatctggggccgcgccggtgaccaggtcgccaaggcgatgatg
gaccaactcggccaggaagacgtcgtcaaccgcaagggcgagacagtcaagcaggagtcg
ttcaactccatctacatgatggcggactcgggtgcgcgcggttcggccgcgcagatccgt
cagctcgccggcatgcgcggcctgatggcgaagccggacggctccatcatcgagaccccg
atcacgacgaacttccgtgaagggctgaacgttctgcagtacttcatctcgacccacggc
gcccgtaagggtctggccgataccgcgctgaagaccgcgaactccggctacctgacccgt
cgcctggtcgacgtgacccaggatctggtcgtcaccgaagatgattgcggcacgcgtgac
ggcttcgtgatgaaggcgttgatcgagggcggcgaagtcatcgagccgctgcgcgatcgc
atcctcggccgtgtttgcgccgaggacatcgtcaaccccgattcgcaggaaacggtcatg
gaggccggcacgctgctcgacgagaacgcggtcgatctgatcgagagcctcggcatcgac
gaagtgaaggtgcgcactgcactgacctgcgagacccgctacggcctgtgtggcaagtgc
tacgggcgcgacctcggtcgcggcaatctggtcaacgtcggcgaggcggtcggtgtcatc
gccgcgcagtcgatcggcgagccgggtacgcagctcacgatgcggaccttccacgtcggt
ggtgcggcgtcgcgagctgccgccgcgagcggtgtcgagtcgaagtcggccggtaccatc
cgctttgccggcaacatgcgctacgtttcgaacgccaagggggagaaggtcatcatcgcc
cgctcggcggagatcgtcgtcgccgacgacatgggccgcgagcgcgagcgccacaagctc
ccctatggtgcaacgctgctggtcgatgacggcgccgccatcaaggccggcgtgatgctc
gcgacctgggatccgcatacccgcccgatcgtcacggaatacgccggtaccgtgaaattc
gagaacgtcgaggaaggtgcgaccgttgccaagcagatcgatgaagtgacaggtctgtcg
actctggtcgtcatcgatggcaagcgcaaggcgggttcgtcgtcgaagggcgtgcgtccg
caggtcaagctgctcgacgagagcggcgaggaagtgaagatcgcaggcaccgaccattcg
gtggcgatcaccttccaggtcggttcgctgattaccgtcaaggatggtcaggttgtcagc
gtcggcgacattctggcgcgtatcccgcaggaatccgccaagacccgcgacatcaccggc
ggtctgccgcgcgtggcggaactcttcgaagcgcgtccgcccaaggatgccggggtgctc
gccgaatacaccggcacggtttcgttcggcaaggacaccaagggcaagcagcgcctggtg
atcaccgaagccgacggcaccgcgcacgagttcctgattccgaaggacaagcacgtgatg
gtgcacgacggccaggtcgtcaacaagggcgaactgatcgtcgacggcccggccgacccg
cacgatatcctccgtctgcagggcatcgaggcgctcgcgcgctacatcatcgacgaagtc
caggacgtgtaccgtctgcagggcgtgaagatcaacgacaagcacatcgaggtgatcgtc
cgtcagatgctgcgccgcgtggtcatcaccgacgcgggtgacaccaagttcatccgcgag
gagcaggtcgaacgttcggaagtgctcgacgagaacgaccgtgtcgaagccgacggcaag
ctggcgggccactatcagaacatcctgctgggtatcacgaaggcatcgttgtcgaccgat
tcgttcatctccgccgcgtccttccaggaaacgacgcgcgtgctgaccgaagcggccatc
atgggcaagcgcgacgaactgcgcgggctcaaggaaaacgtcattgtcggccggctcatt
cccgccggtaccggcatggcgtaccaccgcaaccgccgggcgcagtcggcgggcgaggat
ctcgcagccgagcatgcatgggcggcgatgcaagaacaaccgtcggaagtgcccgatggc
gtctcgcaagatgtgcaggccggttga
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integrated database retrieval system
