Arthrobacter zhangbolii: MUK71_00245
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Entry
MUK71_00245 CDS
T08979
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
azh
Arthrobacter zhangbolii
Pathway
azh03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
azh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MUK71_00245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
azh03400
]
MUK71_00245
Enzymes [BR:
azh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MUK71_00245
DNA repair and recombination proteins [BR:
azh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MUK71_00245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
DNA_primase_S
DNA_ligase_OB_2
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
UON92133
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Position
44908..47499
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AA seq
863 aa
AA seq
DB search
MATGGGKTQETVSVEGHRLRLTNLDKVLYPETGTTKADVISYYAAVADYMLPHSRNRAAT
RKRWVHGVGTPEEPGQVFFQKNIEDSAPSWVKRFPIEHKTSTNYYPVVNDLATLTWLAQS
AALEIHVPQWQFGPRGKIGAADRMVLDLDPGDGVGLAECAEVARLARSILSDMGLDARPV
TSGSKGIHLYAALDGSQTSDEVNAVAHELARALEADNPDLVVSDMKKSLRRGKVLVDWSQ
NNGNKTTICPYSLRGRFQPTVAAPRTWAELEDPGLAQLDYEQVLERLDDPDPLAGMADGT
FAEKALEEAVEEEAGGSRSADRLGKYRSMRDAAKTPEPVPEEPSTPTEGNSFVIQEHHAR
RLHWDFRLEHDGVLVSWALPKGPPSTTGKNNLAVQTEDHPLDYGTFEGHIPKGEYGGGDV
KIWDHGTYEREKWRDGKEVIAVLHGQPDGGLAGQGAADRRFALIHTGSGGDKANNNWLIH
LMKDQPKPGEKGRDDESDGGVKVKPEAGRPRPATPQAAVAAAAEADTGPAPTVPEEGTDD
SVPVIEPMLATAGSRAEINNDDEWAFEMKWDGVRAVVTVTPEGTRLISRNGKDMTAAYPE
LADLSGHLNGERAVLDAEIVTLNKAGRPDFGLLQPRMHLSKPREIAAAAQRTPAHLMVFD
LLWLDGKSLEELGYEQRREILESAVEATPDGHLQVPPALDMGMDEAVAASKELGLEGVMA
KRRTSTYSPGRRSKNWLKLKNQFTQEVVVVGWRPGQGNRQNKVGSLLVAIPDGVDLKYIG
RVGSGLSEKDLALIGPRLKKMSRKTPPLDDVPGADASDAQWVRPALVGEVTFSERTGSGK
LRHPVWRGLRPDKKPSDVVVEPA
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atggcgacaggcggagggaaaacgcaggaaaccgtcagcgtggagggacaccggctccgc
ctgaccaatctcgacaaggtgctgtaccccgaaacgggaaccaccaaagccgacgtcatt
tcctattacgccgccgtggcggattacatgcttccgcattcacgcaaccgtgcggccacc
cgcaaacggtgggtgcacggcgtcggtacaccggaggagccgggacaggtgttctttcag
aagaacatcgaggactccgcgccgtcgtgggtgaaacggttccccattgagcacaaaacc
tcgaccaactattacccggtggtcaatgacctggccaccctcacctggctggcccagtca
gcggccctggagatccacgtgccgcagtggcagttcggcccgcggggcaaaatcggcgct
gcggaccggatggtgctggacctggatcccggagatggcgtcgggctggctgagtgcgcc
gaagtagcccggctggcccggtccatcctctcggatatgggcctggatgcccggccggtc
accagcgggtccaagggaatccacctgtacgcagcgctggacggcagccagacctcggat
gaggtcaatgcggtggcccacgagctggcccgggcgctggaggcggataaccctgacctg
gtggtcagtgatatgaagaagtcactgcgccggggcaaggtactggtggactggagccag
aacaacggcaacaaaaccaccatctgcccctattcgctgcgtgggcgcttccagccgacc
gtggctgctccccggacctgggcggagctcgaggatcccggcctggctcaactggattac
gagcaggtgctggaacgcctcgatgatccggacccgctggccgggatggcggacggaacc
tttgcggagaaagcattggaagaggcggttgaagaggaagcgggcggcagccggtccgcg
gaccggctggggaaataccggagcatgcgtgacgcggccaaaaccccggagccggtcccg
gaagagccgtccacccccacggaggggaacagcttcgttatccaggagcaccacgcccgc
cgcctgcactgggatttccggctggaacacgacggcgtgctggtttcctgggcgctgccc
aaaggaccgccgtccaccaccggcaaaaacaatctggcggtgcagaccgaggatcatccg
ctggattacggaaccttcgaaggacatattcccaagggggaatatggcggaggagacgtc
aaaatctgggatcacggcacctacgagcgggaaaaatggcgggacggcaaggaagtcatt
gccgttctgcacggccagcccgacggcggcctggcgggacagggtgcggcggaccggcgt
tttgccctgatccacaccggctcgggcggtgataaggcaaacaacaactggctcattcac
ctcatgaaggatcagccaaagcccggtgaaaaaggcagggatgacgagtccgacggcggc
gtgaaggtaaagccggaggcggggaggccccggcccgcgacgcctcaggccgccgtcgca
gcggcggcggaggctgataccggtcctgcaccgaccgtgccggaggaaggaacggatgac
tccgtcccggtgatcgaaccgatgctggcgacggcgggcagccgtgccgaaatcaacaac
gatgacgaatgggccttcgagatgaaatgggacggcgtgcgcgccgtcgtgaccgtaacc
ccggaagggacccgcctgatcagccgcaacggcaaggatatgaccgccgcctatccggaa
ctggcagatctcagcgggcacctgaacggggagcgggccgtactggatgcggaaatagtg
acgcttaacaaggccggccgcccggacttcgggttgctgcagccgcggatgcatctgagt
aagccgcgggaaatagccgccgcggcgcagcggacgccggcgcacctgatggtcttcgac
ctgctgtggctggacggcaagtccctggaggagctgggctacgaacagcgccgggaaatc
ctcgaatccgcggtggaagccaccccggacggacacctgcaggtgcccccggcgctggac
atgggcatggatgaagccgtcgccgccagcaaggaactcgggctggaaggagtgatggcc
aaacggcgcaccagcacctacagcccgggccggcgctcgaaaaactggctgaagctgaag
aaccagttcacccaggaagtggtggtggtgggctggcggccgggccagggcaaccggcag
aacaaggtgggctccctgctggtggccattcccgacggtgtggacctgaaatacatcggc
cgggtcggctcaggactgagtgaaaaggacctggcactgatcggtccaaggctgaagaaa
atgtcccgcaaaaccccgccgctggacgatgtgcccggagccgacgcttcggatgcccaa
tgggtacgtccggcactggtgggggaagtgacgttctccgagcgcaccggcagcggaaaa
ctgcgccaccccgtttggcgcggcctgcgcccggataaaaaaccctccgacgtcgtggtg
gagccggcctag
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