Azoarcus sp. CIB: AzCIB_0133
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Entry
AzCIB_0133 CDS
T04019
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
azi
Azoarcus sp. CIB
Pathway
azi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
azi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AzCIB_0133
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
azi03019
]
AzCIB_0133
03400 DNA repair and recombination proteins [BR:
azi03400
]
AzCIB_0133
Enzymes [BR:
azi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AzCIB_0133
Messenger RNA biogenesis [BR:
azi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AzCIB_0133
DNA repair and recombination proteins [BR:
azi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AzCIB_0133
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
DEAD
Helicase_C
AAA_19
UvrD_C
UvrD_C_2
Viral_helicase1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AKU10038
LinkDB
All DBs
Position
156577..161733
Genome browser
AA seq
1718 aa
AA seq
DB search
MAVPPAAPRARCLCLDIETARQDRLVLRELGMFRPDLDARLRLPGKAPDLVPRLDALTEG
AAFVLGHNVVAFDQPALAALHPELALHRLPLIDTLELSPVAFPQNPYHRLVKDYKLCRTT
RNDPVRDAELAYALFVDQSEALQQRVADHPDEALCLHYLLAPENGKGVANFFATLRRALR
PSLAETAAAWRRVTAGKGCITGQRWVLDHCLADPAWHKPLAYALAWLRVAGGNSVLPPWV
SLSFPKTREVIAALRDVPCPDLACAWCRDQHDLDTVLPRYFPGITRFRSTPTTADGRSLQ
QAIVENGFAGRPTLAILPTGGGKSLCFQLPALARYYRNGSLTVVISPLQSLMKDQVDNLE
ARGITCAGYLNSLLNPMERRVMLDKLRLGDLGLIFVAPEQFRSTAFANALMHREIGAWVF
DEAHCLSKWGHDFRPDYLYVSRFIKARQKDKPSPVFGFTATAKPDVVDDICAHFEKRLGV
VLDRLEGGVSRENLSYEVRTVPAQAKYAETLRLLQDALREEGGAIVFCARQKTVEEVAEF
LKNAGLDCGYFHGGMLPANKRAVQEAFLAGTLRVIAATNAFGMGVDKPDVRLVIHLDTPG
SLENYLQEAGRAGRDQAPARCILLYDDADLDVQFRLLRNSRLTQHDIGAILKALRAIERK
DRSEGKVVVTSGEILLEIPDAHRIDPDASDADTKVRIAVAWLEEARLLERHENHTRVFPG
SLLVATEEEARALLHRKLGPDADVEPYVRILTILIQAEDDEGLSTDELMLATGKDSRTLQ
HMLRELDRWKLLSNDTEIGVTFYRDPDTAQRIDELARIEDALLKNLREEAPDADQEGWQI
LNVRRLCDTLRRDAQVDFDPDKLTRLLKSFAEPFGQGATHRGFFALRPQTADSRYLKVLR
NWQDIETIRERRMRLARALVQEFQRRRQGNTLLVTCKQGELEAALQADTTLADLEIDKWD
VALSAALLYLDANEVLHLARGKAVFRSAMSIELNAEARRRQFKKSDYAELALHYKDKIVQ
VHVMAEYAKLSIRKIQAAMAFIVDYFSLDRAEFVRRYFAGRKDVLEMATTEAAHRRILTD
LANPEQQAIVAAPLEGNHLVLAGPGAGKTRVIVHRVAWLLRECMVLPEAIMVLAYNRSAA
NEIRRRLWALVGADAAGVAVQTLHGLAMRLTGTSYAVAIERGEAVDFGEVIRQATRRLRA
AEQDPSVNDGVGPSILRDRLLSGLRFLLVDEYQDINGDHYELISAVAGRTLQTEEDRVSL
MVVGDDDQNIYAFDGASVRYIRQFETDYAARRYALIENYRSTKHIIHCANRVIERARERM
KAGQAIRVNHARRDQPDGGEHAALDPLTEGRVHVLEVPRNPHQEVQVALVELQRLHDLLT
HRATGAPGQWGRFAVIARRWEDLEPMAALCRLRGIPVRLQRDAGQVSLHQTREGNALVTL
LRGSRSNARRRRVLVRVGVLSRWFRRRFHAPPDGLIDHPYRAALAQFISDAESAAPGREL
VVDDLIESLYDFGAIGKPPADARPNAPLVLMTAHRAKGLEFDHVLVLDGGGWQGRGDDER
RLFYVAMTRARKSLTLCEVVGGQHPFARDLEGLVLRSRPKALPPQPGVVHRIWCADPEKV
VLSWPGRFAPTAPIHGALAALDVGSPLALRQRSGGRPGWEITDASGVAVGRMSSKFRPPQ
GEIVAVRVAAVLVRHAREDEQGLQCESWELVLPEIEYG
NT seq
5157 nt
NT seq
+upstream
nt +downstream
nt
atggccgttccgcccgctgcgccccgtgcgcggtgcctgtgcctcgacattgaaaccgcc
cgccaggaccgcttggtcctgcgcgagctgggcatgtttcgccccgatctcgatgcgcgg
ctgaggctcccgggcaaggcgccggatctggtgccgcggctggatgcgttgaccgaaggg
gccgccttcgtcctcggccacaacgtcgtcgccttcgaccagccggcgctggcggcgctg
catcccgagctcgcgctgcaccgcctgccgctgatcgacacgctcgaactctcgcccgtc
gcttttccgcagaacccgtatcaccggctggtgaaggactacaagctgtgcaggacgacg
cgcaacgatccggtgcgcgatgcggagctcgcctacgcgctgttcgtcgaccagagcgaa
gccttgcagcagcgcgtcgccgaccatccggacgaggcgttgtgcctgcattacctgctc
gcgccggagaacggcaagggcgtggcgaacttcttcgcgaccttgcgtcgcgcgctgcgg
ccatcgctcgcggaaactgcggcggcatggcggcgcgtgaccgctggcaagggctgcatc
accgggcagcgctgggtgctcgatcactgcctggccgatcccgcgtggcacaaaccgttg
gcgtatgcgctggcgtggctgcgcgtcgcgggcggcaattcggtgctgccgccgtgggtg
agcctgagtttcccgaagacgcgcgaggtgattgcggccctgcgcgacgtgccctgcccg
gacctggcctgcgcgtggtgccgcgaccagcacgacctcgacaccgtgctgccgcgctac
ttccccggcatcacgcgcttccgcagtacgccgaccaccgcggacggccgctcgctgcag
caggcgatcgtcgagaacggcttcgccggccgcccgacgctcgcgattctgccgaccggc
ggtggcaagtcgctgtgcttccagcttcccgcgctggcgcgctattaccgcaacggcagc
ctgacggtggtgatctcgccgctgcagtcgctgatgaaggaccaggtcgacaacttggag
gcgcgcggcatcacctgcgcgggctacctcaacagcctgctcaacccgatggaacggcgg
gtgatgctcgacaagctgcgcctgggtgatctcggtctgatttttgtcgcgccggagcag
ttccgcagcaccgccttcgccaatgcgctgatgcatcgcgagatcggtgcgtgggtgttc
gacgaggcgcactgcctgtcgaagtggggccacgacttccggccggactacctctacgtg
tcgcgcttcatcaaagcacgccagaaggacaaaccctcgccagtgttcggcttcaccgcg
accgccaagccggatgtggtcgacgacatctgcgcgcacttcgagaagcgcctcggcgtc
gtgctcgaccgcctcgaaggcggagtgagccgcgagaatctgagctacgaggtcaggacg
gtgccggcgcaggcgaagtacgccgagaccttgcgcctgctgcaggacgccctgcgcgag
gagggcggtgcgatcgtgttctgcgcgcggcagaagacggtcgaggaggtcgcggaattc
ctgaagaatgccggcctcgactgcggttacttccacggcggcatgctcccggcgaacaag
cgcgcggtgcaggaagcctttcttgccggcacgctacgcgtcatcgctgcgaccaacgcc
ttcggcatgggcgtcgacaagcccgacgtgcggctcgtgatccacctcgacacgcccggt
tcgctggagaactacctgcaggaagccggccgcgccgggcgcgatcaggcgccggcgcgc
tgcatcctgctctacgacgacgccgacctcgacgtccagttccgcctgctcaggaactcg
cgcctcacgcagcacgacatcggcgccatcctcaaggcgctgcgcgcgatcgagcgcaag
gaccgcagcgagggcaaggtcgtcgtcaccagcggcgagatcctgctcgaaatccccgac
gcgcaccgcatcgatcccgacgccagcgacgccgacaccaaggtgcgcatcgcggtggcc
tggctcgaggaagcgcgcctgctcgaacgccacgaaaatcacacgcgcgtcttccccggc
agcctgctcgtcgcgaccgaggaagaggcgcgcgcgctcctgcacaggaagctcgggccg
gacgcggacgtcgagccctacgtgcgcatcctcaccatcctgatccaggccgaggacgac
gagggcctgtcgaccgacgagctgatgctcgcgaccggcaaggactcgcgcacgctgcag
cacatgctgcgcgaactcgaccgctggaagctgctgtcgaacgacaccgagatcggcgtc
actttctatcgcgatcctgacaccgcgcagcgcatcgacgagctcgcgcgcatcgaggac
gccctgctgaagaacctgcgcgaagaggcgcccgacgccgaccaggaaggctggcagatc
ctcaatgtgcgccgcctatgcgacaccttgcggcgcgacgcgcaggtcgatttcgacccg
gacaagctcacccgcctgctcaaatcgttcgccgaacctttcgggcaaggcgcgacccat
cgcggcttcttcgcgttgcgcccgcagaccgcggacagccgctatctgaaggtgctgcgc
aactggcaggacatcgagacgatccgcgaacggcgcatgcgcctcgcccgtgcgctggtg
caggaattccagcgccgccgccagggcaacacgctgctcgtcacctgcaagcagggcgag
ctcgaagccgcgctgcaggccgacacgacgctcgccgacctcgaaatcgacaaatgggat
gtcgccctctccgcggcgctgctctacctcgacgccaacgaggtgctgcatctcgcgcgc
ggcaaggcggtgttccgctccgcgatgagcatcgaactcaacgccgaggcgcgccgccgc
caattcaagaagtccgactacgccgaactcgcgctgcactacaaggacaagatcgtccag
gtgcacgtgatggccgagtacgccaagctctcgatccgcaagatccaggcggcgatggcc
ttcatcgtcgactacttcagcctcgaccgcgccgagttcgtgcgccgctacttcgccggg
cgcaaggacgtgctcgagatggcgaccaccgaggccgcgcaccgcagaatcctcaccgac
ctcgccaacccggagcagcaggccatcgtcgccgcacccctcgaaggcaaccacctcgtg
ctcgccggcccgggcgccggcaagacgcgtgtgatcgtgcatcgcgtcgcctggctgctg
cgcgaatgcatggtgctgcccgaagccatcatggtcctcgcctacaaccgctccgccgcc
aacgaaatccgccggcgcctgtgggcgctggtcggcgcggacgcggccggcgtcgcggtg
cagacgctgcatgggctggcgatgcgcctcaccggcaccagctacgccgtcgcgatcgag
cgcggcgaggcggtcgacttcggcgaggtgatccgccaggccacccggcgcctgcgcgcc
gccgagcaggacccgagcgtgaacgacggtgttggcccctccatcctgcgcgaccgcctg
ctctccggcctgcgcttcctgctggtcgacgagtaccaggacatcaacggcgaccactac
gagctcatcagcgcggtggccggccgcacgctgcagaccgaggaagaccgcgtctcgctg
atggtggtcggcgacgacgaccagaacatctacgccttcgacggcgcgagcgtgcgctac
atccgccagttcgaaaccgactacgccgcgcgccgctacgcgctgatcgagaactaccgt
tcgacgaaacacatcatccactgcgccaaccgcgtcatcgaacgcgcgcgcgagcgcatg
aaggcgggacaggcgatccgcgtgaaccacgcccgccgcgaccagcccgacggcggcgag
cacgccgcgctcgacccgctcaccgaaggccgcgtgcatgtcctcgaagtgccgcgcaac
ccgcatcaggaagtgcaggtcgcactcgtcgaactgcagcgcctccacgacctgctgacg
catcgcgcaaccggcgcgcccggccaatggggccgcttcgccgtcatcgcccgtcgctgg
gaagacctcgaaccgatggccgcgctgtgccgcctgcgcggcatcccggtccgcctgcag
cgcgacgccggccaggtcagcctgcaccagacgcgcgaaggcaacgccctcgtcaccctc
ttgcgcggctcacgcagcaatgcccggcgccgccgcgtgctggtgcgcgtgggcgtcctg
tcacgctggttccgccgccgcttccacgccccgcccgacggcctcatcgaccacccctac
cgcgccgcgctcgcgcagttcattagcgacgctgaatccgccgccccgggccgcgagctc
gtcgtcgacgacctcatcgagtccctgtacgacttcggcgccatcggcaaaccccccgcc
gatgcccgccccaacgcgccgctggtcctgatgaccgcccaccgtgccaagggcctggaa
ttcgaccacgtgctggtcctcgacggcggcggctggcaggggcgcggcgatgacgagcgg
cggttgttctatgtcgcgatgacgcgggcgcggaagtcgctgacgctttgcgaggtggtc
ggagggcagcatccgttcgcgcgcgatctggaggggctggtgctgcgttcgcgaccgaag
gcgctgccgccgcagccgggcgttgtgcatcgcatctggtgtgccgatccggagaaggtc
gtgctgtcgtggccggggcgcttcgcgccgactgctccgattcacggtgcgctggcggcg
ctcgacgtcggtagtccgctggcgctgcggcagcggagcggtggccgtcccggatgggaa
atcaccgatgcgtcgggcgtcgcggttggccggatgtcgtctaagttccggccgccgcag
ggcgaaatcgttgcagtgcgggtggcagcggtgctggtgcgccatgcgagggaagacgag
cagggcttgcaatgtgagtcgtgggagctggtgctgccggagatcgagtatggatag
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