Azoarcus sp. CIB: AzCIB_0732
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Entry
AzCIB_0732 CDS
T04019
Name
(GenBank) virulence-associated protein
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
azi
Azoarcus sp. CIB
Pathway
azi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
azi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AzCIB_0732
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
azi03019
]
AzCIB_0732
03016 Transfer RNA biogenesis [BR:
azi03016
]
AzCIB_0732
Enzymes [BR:
azi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AzCIB_0732
Messenger RNA biogenesis [BR:
azi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AzCIB_0732
Transfer RNA biogenesis [BR:
azi03016
]
Prokaryotic type
tRNA degradation factors
AzCIB_0732
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_HELZ2
RNase_II_C_S1
OB_Dis3
CSD
Motif
Other DBs
NCBI-ProteinID:
AKU10637
LinkDB
All DBs
Position
817922..820720
Genome browser
AA seq
932 aa
AA seq
DB search
MKKEKGKTTTAATSASPREPSPIRRADPFYERESASYEHPLPSREYVEQTLAEQGVPMTF
QELCAALDVSGEETGLFERRLRAMQRDGELLRNRRDAYLLPNKADLIRGRVSGHADGFGF
LIRDDGQPDVFLGPKEMREVLHGDRVIIRVTGTDRRGRPEGKVVEVLERANTRIVGRVLN
EHGVQVVVPENRRIAQDILVAPGGKKAQPGQVVTVELIAQPTKVAQPIGRVIEVLGNYAD
PGMEIEIALRKHELPFEFSSEAKAETRKLPATVRKKDWAGREDITKLPLVTIDGETAKDF
DDAVYCERQGRGYRLIVAIADVSHYVQPGSALDDEAQERGNSVYFPRRVIPMLPEKLSNG
LCSLNPQVERLCMVCDMSVGPTGDIKAYRFYPAVMFSHARLTYTQVAAALYDKDAAARDA
VGELLPHLENLDKLFRVLLKARAKRGAIDFETTETRMIFDAEGKIERIVAEVRNDAHRLI
EECMLAANVCASEFLQEREHPALYRVHEGPTPGKLEKLRGFLAEFGLGVSGGDEPKAGDY
AKLLETVKDRPDAQLLQTVMLRSLRQAVYSPDNVGHFGLAYEAYTHFTSPIRRYPDLLVH
RSIKAALESRTYEAGDWDEIGLHCSATERRADEATRDVVAWLKCYYMQDKVGAEFTGSVS
AVVPFGLFVALDDIFIEGLVHISELGSDYFHFDETRHELAGERTGARFRLSDRVRVQVVR
VDLETTKIDFRLIEGAPRATERAGKTAKDKATAAKAVPKAAVATAAPVAAAPKAKGGRKT
TAAPAVAPEVSVVPVKKSRTTRKTAVVAAPEVAPAAPGKGAGRARAKSEVAETKPTKVAG
ATKKVAQVAEPAAPVKVTGAKKATGETTARKLAKTAKVTKTSTAPKADKAPNAEKAPKAE
KAPKAEKAPKAEKAAEPKTETAASTRKVKRRG
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaagaaaaagggaaaacgaccacggcggcaacttccgccagcccccgcgaaccc
agccccatccgccgcgccgatccgttctacgagcgcgagtcggccagctacgagcatcct
ctgccgagtcgcgagtatgtcgaacagacgctcgccgagcagggcgtgccgatgactttc
caggaactgtgtgccgcactcgacgtgagtggcgaggaaacgggactgttcgagcggcgc
ctgcgggcgatgcagcgcgacggcgaactgttgcgcaaccgccgcgacgcctatctgctc
ccgaacaaggcggacctgatccgcggacgcgtgtcggggcatgccgacggattcggcttc
ctgatccgcgacgacggtcagcccgacgtgttcctcgggccgaaggagatgcgcgaggtg
ctgcacggcgatcgcgtgatcatccgcgtcacgggcacggaccggcgcggacgtcccgaa
ggcaaggtcgtggaagttctggagcgcgcgaatacgcgcatcgtcggccgcgtgctcaac
gagcatggggtgcaggtggtggtgccggaaaaccggcgtatcgcgcaggacatcctggtt
gcgccggggggcaagaaggcccagccgggccaggtggtcacggtcgaactgatcgcacag
ccgaccaaggtcgcgcaaccgatcggacgcgtgatcgaggtgctcggcaactatgcggat
ccgggcatggaaatcgagatcgcgctgcgcaagcacgagttgcccttcgagttctcgtcc
gaggcgaaggccgagacgcgcaaattgccggctaccgtgcgcaagaaggattgggcgggg
cgcgaggacatcacgaagctgccgctggtgacgatagacggcgaaacggcgaaggacttc
gacgacgcggtgtactgcgagcgccaggggcgcggttaccgtctgatcgtcgcgatcgcg
gacgtctcgcattacgtgcagcccggcagcgcgctcgatgacgaggcgcaggaacgcggc
aactcggtgtatttcccgcgccgcgtgatcccgatgctgcccgagaagctcagtaatggt
ctgtgctcgctcaatccgcaggtcgagcgcctgtgcatggtgtgcgacatgagcgtcggg
ccgacgggggacatcaaagcgtatcgcttctacccggcggtgatgttctcgcacgcgcgt
ctgacttacacgcaggtggctgcggcgctatacgacaaggatgcggcggcgcgcgacgcg
gtgggcgaattgctgccgcatctcgagaacctcgacaagctcttccgcgtgctgctgaag
gcgcgcgcgaagcgcggcgcgatcgacttcgagacgaccgagacgcgcatgatcttcgac
gccgagggcaagatcgagcgcatcgtcgcggaggtgcgcaacgatgcgcatcgcctgatt
gaggaatgcatgctcgcagccaacgtgtgtgcgtcggagttcctgcaggaacgcgagcat
cccgcgctgtaccgcgttcatgaaggtccgacgccgggcaagctcgagaagctgcgcggc
ttcctggccgagtttggcctcggcgtgagcggcggggacgagcccaaggcgggcgactac
gcgaagttgctggagacggtgaaggaccgcccggacgcgcagctgctgcagacggtgatg
ctgcgttcgctgcgtcaggccgtgtatagcccggacaatgtgggccacttcggcctcgcg
tacgaggcgtatacccacttcacgtcgccgatccggcgttacccagacctgttggtgcat
cgctcgatcaaggccgcgctcgagagccgtacctacgaggccggcgactgggacgagatc
ggcctgcactgctcggcgaccgagcggcgcgcggacgaggcgacgcgcgatgtggttgcg
tggctgaagtgttactacatgcaggacaaggtcggcgccgaattcaccggcagcgtgtcg
gcggtggtacccttcggcctcttcgtcgccctcgacgacattttcatcgaggggctggtc
catatttcggagctcggcagcgactacttccacttcgacgagacgcgccatgagctcgcc
ggtgagcgcacgggtgcgcgtttccgcttgtcggaccgcgtgcgggtgcaggtcgtgcgg
gtcgatctggaaacgaccaagatcgacttccgcctgatcgaaggcgcgccgcgcgcgacc
gaacgggccgggaaaacggcgaaggacaaggccactgcagcgaaggctgtaccgaaggca
gcggtcgcgaccgcggctccggtcgcggcagcgccgaaggccaaaggcggccggaagacg
acggccgcgcccgctgtggcgcccgaagtgtccgtcgtgccggtgaagaagtcacggacg
acgcgcaagaccgccgtcgtagcggcccccgaagtagcgcccgcagcgccgggcaagggc
gccgggagggccagggcgaagtctgaggtagccgagacgaagccgacgaaggtcgccggt
gcgacgaagaaggtcgcccaggtcgccgagccggcggcaccggtcaaggtcaccggcgcg
aaaaaggcaaccggggaaacgacggcccgcaaacttgccaagaccgccaaggtgacgaag
acgagcacggctccgaaggcggacaaggctccaaatgcggagaaggctccgaaggcggag
aaggctccgaaggcggagaaggctccgaaggcggagaaggcagccgagccgaaaactgaa
actgcagcatctacgaggaaggtgaaacgccgtggctaa
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