Azoarcus sp. CIB: AzCIB_1922
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Entry
AzCIB_1922 CDS
T04019
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
azi
Azoarcus sp. CIB
Pathway
azi03420
Nucleotide excision repair
azi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
azi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AzCIB_1922
03430 Mismatch repair
AzCIB_1922
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
azi03400
]
AzCIB_1922
Enzymes [BR:
azi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AzCIB_1922
DNA repair and recombination proteins [BR:
azi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AzCIB_1922
MMR (mismatch excision repair)
Other MMR factors
AzCIB_1922
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
AAA_11
NACHT
V4R
ResIII
Motif
Other DBs
NCBI-ProteinID:
AKU11817
LinkDB
All DBs
Position
2147627..2149720
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AA seq
697 aa
AA seq
DB search
MKAANAMEVADPLAYLDHLNEAQRAAVLFGTQPDSPDHDHPLLVIAGAGSGKTSTLAHRV
AHLLASGADPGRILLLTFSRRAADEMNRRVTRIVAQQAKSRPRLAGASLEWSGTFHGIGA
RLLREFAGRIGLEPGFTIHDREDSGDLMNLARHELGLSAKSKRFPMKGTCLAIYSAAVNT
QAPLDEVLQQSFPWCSEWEADLKRLFLAYVEAKQAQQVLDYDDLLLYWAQMITDADLATE
IGTRFSHVLVDEYQDTNRLQATILLAMKPDGRGLTVVGDDAQAIYAFRGATVRNILDFPA
HFDPPAHQITLDRNYRSTLPILGAANAVIALASERFTKDLWTERAGAQKPRLISVRDDAD
QAACVFESVLARREEGVRLKSQAVLFRASHHSARLEVELTRRNLPFVKFGGLKFLEAAHV
KDVLAVLRWAINPRDRVSGFRAIQLHAGIGPKTAGRVLDNIASAAPGCLLLAEQPVPDAA
RGAWTAFAGLLESVAASNWPASLEPICQWYAGEMARLFDDATTRAGDIEQLARIAATYPN
LERFLTELTLDPPSATSDEAGIPLLDEDYLILSTIHSAKGQEWSAVTLLNAVDGCLPSDL
ATGSSSEIEEERRLLYVAMTRAKDALDLIVPQRFHVSQQPGHGDRHVYASRTRFIPNRIL
ESFEQTSWPPPAAAPRPTAESRRIAFDLAEKMRSMWK
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgaaggcggcgaacgcgatggaagttgcggatcctctcgcctatctggatcacctcaac
gaagcacagcgtgcggccgtccttttcggcacgcagcccgactccccggaccacgatcac
ccgcttctggtgatcgccggtgcgggttcgggcaagaccagcacgctcgcccaccgcgtc
gcgcacctgctcgccagcggtgccgacccgggccgcatcctgctgctgaccttttcgcgc
cgcgcggccgacgagatgaaccgccgcgtcacgcgcatcgtcgcccagcaggcaaaatcc
cgtccgcgactcgctggcgcgtccctcgaatggtccggaacgttccacggcatcggcgcc
cgcctgctgcgcgagttcgccggccgcatcgggctcgaaccggggttcacgatccatgac
cgcgaggactccggcgacctgatgaacctggcgcggcacgaactggggctctcagcaaag
tcgaagcgattcccgatgaaagggacctgcctcgcgatctactctgccgcggtcaacacc
caggcgccgctcgacgaggtgctgcagcagtccttcccgtggtgcagcgagtgggaggcc
gacctcaaacgcctctttctcgcctacgtcgaggccaagcaggcgcagcaggtcctcgac
tacgacgacctgctgctctactgggcgcagatgatcaccgacgccgatctcgcgacggaa
atcggcacccgcttctcccacgtgctcgtcgatgagtaccaggacaccaaccgcctgcaa
gccaccatcctgctcgcgatgaaacccgacggacgcggccttaccgtcgtcggtgacgac
gcgcaggccatctacgccttccgcggcgcgacggtgcgcaacatcctcgacttccctgcc
catttcgacccgccggctcaccagatcacgctcgaccgcaactaccgttcgaccctgccc
atcctcggcgccgcgaacgccgtcatcgcgctcgcaagcgaacgcttcaccaaggacttg
tggaccgagcgcgccggggcgcagaaaccgcgcctgatctcggtacgggacgatgcggac
caggccgcctgcgtcttcgaatcggtgctcgcgcgccgcgaggaaggcgtgcgcctcaag
tcgcaggccgtgctgttccgcgcgtcgcatcacagcgcccgcctggaggtcgagctcacc
cgccgcaaccttccgttcgtgaaattcggcgggctcaagttcctcgaagcggcacacgtc
aaggacgtgctcgccgtgctgcgctgggccatcaatccgcgcgaccgcgtgtcgggtttt
cgcgccatccagcttcacgccggcatcggcccgaaaacggccgggcgggtgctcgacaac
atcgccagcgccgcgcccggttgcctcctgctcgcggagcagcccgtcccggacgcggca
cgcggcgcgtggaccgccttcgcaggactgctggaatcggttgctgcctccaactggcct
gcgagcctcgagccgatctgccaatggtatgcgggcgagatggcgcgcctgttcgacgac
gcaacgacccgcgccggcgacatcgaacagctcgcgcggatcgccgcgacctacccgaac
ctcgaacgcttcctcaccgaactcacgctcgacccacccagcgcgacgagcgacgaagcg
ggcatcccgctgctcgacgaggactacctgatcctgtccacgatccactcggcgaagggg
caggagtggtccgcggtgacactgttgaacgcggtcgacggttgcctgccgtctgacctc
gcgaccggcagcagcagcgagatcgaggaggagcgccgcctgttgtacgtcgcgatgacg
cgcgcgaaggatgcgctcgacctgatcgtgccgcagcgcttccatgtgtcgcagcaaccc
ggtcatggcgaccgtcatgtgtacgccagccgcacgcgtttcatcccgaaccggatcctg
gagagcttcgagcagacctcgtggccgccgcccgcggccgccccccgcccaacggcggaa
tcgcgccgcatcgcgttcgatctagccgagaagatgcgttcgatgtggaagtga
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