Azoarcus sp. CIB: AzCIB_2009
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Entry
AzCIB_2009 CDS
T04019
Name
(GenBank) exodeoxyribonuclease VII, single-stranded DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
azi
Azoarcus sp. CIB
Pathway
azi03410
Base excision repair
azi03430
Mismatch repair
azi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
azi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AzCIB_2009
03430 Mismatch repair
AzCIB_2009
03440 Homologous recombination
AzCIB_2009
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
azi03400
]
AzCIB_2009
DNA repair and recombination proteins [BR:
azi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
AzCIB_2009
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
AzCIB_2009
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AzCIB_2009
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Glyco_transf_4
PUB_1
Motif
Other DBs
NCBI-ProteinID:
AKU11904
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Position
2245510..2247162
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AA seq
550 aa
AA seq
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MQRLIDAGTHPLLARIYAARGISRREELDYSLKALIPPAALKGAHEAATLLADAIEAGAR
MVIVADYDCDGATACAVGVRALRAFGADVGYLVPNRFEYGYGLTPAIVELAAHMEPDVLI
TVDNGIASVEGVAAARSYGMATVITDHHLPGDTLPDADVIVNPNQPGCDFPSKSLAGVGV
MFYTMLALRAELRERGAFAGRQEPNLGELLDLVALGTVADVVKLDHNNRILVSQGLARMR
ADRMHPGIRALFSVAGRDALRASTFDMGFGLGPRLNAAGRLSDMSLGIECLITDDMGRAL
NIAQELDRLNRERRGIEQDMQEGALAHLADFDPGNCATVSLFEPDWHQGVIGIVAGRIKE
RLHRPVIAFARGDEGQLKGSGRSIPNLHLRDALDLVSKQCPDLILRFGGHSMAAGLTILE
TDYDRFQRVFEETVQSLVEPADLTRTLDTDGPLETGYMSLEAARLLEQDIWGQGFPAPLF
DDVFRVDNQRLLKDKHLKLQLSKNNVRFDGIRFNFAEGAPQQIRAAFRLAPNEYNGITSL
QLMLEHFEAA
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgcctgatcgacgccggcacccatccgctgctcgcccgcatctatgccgcgcgc
ggcatctcgcggcgcgaggaactcgactactcgctcaaggccctgattccgcccgcagcc
ctgaagggggcgcacgaagccgctaccctgttggccgatgcgatcgaagccggcgcgcgc
atggtgatcgtcgccgactacgactgcgacggggcaacggcttgcgcggtgggcgtgcgc
gccctgcgggccttcggtgcggacgtcggctacctggtgccgaaccgcttcgagtacggt
tacgggctgacgcccgccatcgtcgagctggccgcgcacatggagcccgacgtcctgatc
accgtcgacaacggcatcgccagcgtggagggcgttgctgcggcgcgcagctacggcatg
gccacggtgatcaccgatcaccacctgccgggcgacacgctgcccgatgccgacgtgatc
gtgaatccgaaccagcccggctgcgacttcccgagcaaatcgctcgccggcgtcggcgtg
atgttctacaccatgctcgcgctgcgggcagaactgcgcgagcgcggcgcgtttgccgga
cgccaggagccgaacctcggcgaactgctggacctcgtagccctcggcacggtcgccgac
gtcgtgaagctggaccacaacaaccgcattctcgtgtcgcaaggcctcgcgcggatgcgc
gccgatcgcatgcatcccggtatccgcgcgctgttctccgtcgccggccgcgacgctttg
cgcgcgagcaccttcgacatggggttcgggctcggcccgcgcctgaacgccgccggccgc
ctgtcggacatgagcctcggcatcgaatgcctgatcaccgacgacatgggccgggcgctc
aacatcgcacaggaactcgaccggctgaaccgcgaacggcgcggcatcgagcaggacatg
caggaaggggcgctcgcgcacctggcggatttcgatcccggcaattgcgccaccgtcagc
ctgttcgagccggactggcaccaaggcgtaatcgggatcgtcgccggccggatcaaggaa
aggctgcaccgcccggtgatcgccttcgcccgcggcgacgaggggcagctgaagggctcc
ggccgctcgatcccgaatctgcatctgcgcgacgcgctcgatctggtgagtaagcaatgc
cccgatctgatcctgcgcttcggcggacattcgatggcggcaggtctgacgatcctcgag
accgactatgaccgcttccagcgcgtgttcgaggaaaccgtccagtccctcgtggaaccc
gcggacctgacccgcacgctggacaccgacggaccgctcgagaccggctacatgagcctg
gaagccgcgcggctgctcgagcaggacatctggggccagggcttcccggccccgctgttc
gacgacgtgttccgcgtcgacaaccagcgcctgctcaaggacaagcacctgaagctgcag
ctgtcgaagaacaacgtgcgcttcgacggcatccgcttcaactttgccgaaggcgcgcca
cagcagatccgggcggcattccgcctggcgccgaacgaatacaacggcatcacgagtctg
cagctgatgctggagcacttcgaagcggcctga
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