Azoarcus sp. CIB: AzCIB_2777
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Entry
AzCIB_2777 CDS
T04019
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
azi
Azoarcus sp. CIB
Pathway
azi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
azi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AzCIB_2777
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
azi03019
]
AzCIB_2777
03009 Ribosome biogenesis [BR:
azi03009
]
AzCIB_2777
Enzymes [BR:
azi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AzCIB_2777
Messenger RNA biogenesis [BR:
azi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AzCIB_2777
Ribosome biogenesis [BR:
azi03009
]
Prokaryotic type
rRNA helicases
AzCIB_2777
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AKU12670
LinkDB
All DBs
Position
3115804..3117705
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AA seq
633 aa
AA seq
DB search
MNPTIESFAQLELSPPILEALAGIGYETPSPIQAACIPHLRAGHDLLGEAQTGTGKTAAF
ALPLLDRLDLSARNPQVLVLTPTRELAIQVAEAFQRYAKNLPGFHVLPIYGGQSMVVQLR
QLSRGAHVVVGTPGRVMDHIERASLNLGDLKTLVLDEADEMLRMGFIDDVEWILEHVPAE
RQTALFSATMPDAIRRVAHRYLREPREVKIKTATTTVTTIRQRFCQIAVAHKLDALTRIL
EVEEEFDAAIVFVRTKTATVELAEKLEARGYAAAALNGDMTQQLRERVIEQLKGGSLDIV
VATDVAARGLDVPRISHVINYDIPYDTEAYVHRIGRTGRAGRTGSAILFVAPREMRMLKV
IERATRQPIEPLQLPSREAVADKRVTAFRQQVATVLESEDLDFFREVVAGMEDSHDADLH
DIAAALAFLAQRERPLQLPRSAGPDIAAAQSAPRAERPPRENRDALLERRRDFADGRLQR
YRIEVGRNQQATPKDIVGAIANEAGIESRFIGQINLYEDYSTVELPGDLPNDVLDILRRV
RVRQRQLNIRPLDHDEAQRDAARPRPGPGPRFGAKPAPRGEDAPRKPFAKPWDKPAGKPG
GDRPQGGKPFHSDHRDTQGTGFKPAKKKPQRDR
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccactatcgaatcctttgcacagctcgagctgagccccccgatcctcgaagcc
ctcgccggcatcggatacgaaaccccgtcgccgatccaggcagcctgcatcccgcacctg
cgcgccgggcatgacctgctgggcgaagcccagactggcaccggcaagacggcggccttc
gcgctgccgctgctcgaccgcctcgacctctccgcccgcaacccgcaggtcctcgtactg
accccgacacgcgaactcgcgatccaggttgccgaggccttccagcgctatgcgaagaac
ctgcccggctttcacgtgctgccgatatacggcggccagagtatggtcgtgcagctgcgc
caactgagccgcggcgcgcatgtcgtcgtcggcaccccgggacgcgtgatggaccacatc
gagcgcgcgagcctcaacctcggcgacctcaagacgctggtgctcgacgaggccgacgag
atgctgcgcatgggcttcatcgacgacgtcgaatggatcctcgagcacgtcccggcggaa
cggcagaccgcgctgttctccgcgacgatgccggacgcgatccggcgcgtcgcgcaccgc
tacctgcgcgagccgcgcgaggtgaagatcaagaccgccacgaccaccgtgacgacgatc
cgccagcgcttctgccagatcgccgtcgcgcacaagctcgacgccctcacgcgcatcctc
gaggtcgaggaggagttcgacgccgcgatcgtcttcgtacgtaccaagaccgccaccgtc
gagctcgccgagaagctcgaggcgcgcggctatgccgccgccgcactgaacggcgacatg
acccagcagctgcgcgaacgggtcatcgaacagctcaagggcggcagcctcgacatcgtc
gtcgcgaccgacgtcgccgcgcgcggcctggacgtgccgcgcatcagccacgtcatcaac
tacgacatcccctacgacaccgaggcctacgttcaccgcatcggccgcaccggtcgcgca
ggccgcaccggcagcgccatcctcttcgtcgcgccgcgcgagatgcgcatgctgaaggtg
atcgaacgggcgacgcgccagccgatcgaaccgctgcaactgccgtcacgcgaagccgtc
gccgacaagcgcgtgaccgccttccgccagcaggtggcgacggtgctcgaatccgaagac
ctcgacttcttccgcgaggtcgtcgccggcatggaggacagccacgacgccgacctccac
gacattgccgccgccctcgccttcctcgcacagcgcgaacgccccttgcagctgccgcgg
agcgccggcccggacatcgccgcagcccaatccgccccgcgcgcggaacgccccccgcgc
gaaaaccgcgacgccctcctggagcgccgccgcgacttcgccgatggacgcctgcagcgc
taccgcatcgaggtcggccgcaaccagcaggcgacccccaaggacatcgtgggcgcgatc
gcgaacgaagccggcatcgaaagccgcttcatcggccagatcaacctgtacgaggattac
agcaccgtcgaactgccgggcgacctgccgaacgacgtcctcgacatcctgcgtcgtgtg
cgcgtgcggcagcgccagctgaacatccgtccgctggaccacgacgaggcgcagcgcgac
gccgcgcgcccccggcccggccccggcccgcgcttcggcgcgaagcccgctccgcgcggc
gaggacgcgccccgcaaaccctttgcgaaaccgtgggacaagcccgccggcaaacctggc
ggcgatcgcccgcagggcggtaagccgttccactccgaccatcgcgacacgcagggcact
ggcttcaaaccggccaagaagaagccgcagcgcgatcgctaa
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