Azoarcus sp. CIB: AzCIB_2811
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Entry
AzCIB_2811 CDS
T04019
Name
(GenBank) fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA degradosome binding protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
azi
Azoarcus sp. CIB
Pathway
azi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
azi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AzCIB_2811
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
azi03019
]
AzCIB_2811
03009 Ribosome biogenesis [BR:
azi03009
]
AzCIB_2811
Enzymes [BR:
azi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AzCIB_2811
Messenger RNA biogenesis [BR:
azi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AzCIB_2811
Ribosome biogenesis [BR:
azi03009
]
Prokaryotic type
rRNA processing factors
AzCIB_2811
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
AKU12704
LinkDB
All DBs
Position
3146217..3149090
Genome browser
AA seq
957 aa
AA seq
DB search
MKRMLFNATQAEELRVAIVDGQKLIDLDIESAAKEQRKSNIYKAVITRIEPSLEAAFVDY
GSERHGFLPFKEISRSYFAPGVDAGKARIQDALKEGQELIVQVEKDERGNKGAALTTYIS
LAGRYLVLMPNNPRGGGVSRRVEGDERSELREVMDQLEVPPGMSLIARTAAIGRNAEELQ
WDLNYLLQLWRAIDGAAQSQSGAFLIYQEGSLVIRAIRDYFQPDIGEILIDTDDVYEQAL
QFMAHVMPANVNRVKRYNDDVPLFSRFQIEHQIESAYSRQVSLPSGGAVVIDHTEALVSI
DVNSGRSTKGADIEETAFRTNLEAAEEIARQLRLRDLGGLIVIDFIDMESQKNQREVENR
LRDALRHDRARVQTGKISRFGLLELSRQRLRPALAETSYIPCPRCNGTGHIRSTESSALH
ILRILEEEAMKENTGAVHLQVPVDVATFLLNEKRSDIAHIEYRHKIQLIIIPNRHLETPH
HEIIRLRHDQLNLEELALASYQMVGKPAEVDLRLPTKDDKKPARAEAVVKGIAPAQPAPV
VEPKPEPAAAPAAEPGLFARLFAWLRGEKTTPAPQPAEEAQSKREARPRGERGENRRGGN
NRNRREGQRAEREEPSQPTRSNGRGEQRQERQERTERAERPERAERQERAERAERPEAAE
RSEGRRQRGPRQPKPVEAVENAAEQQVVEAVAVTGVTETAAPTGEEGTPEKRRRRSRGRR
DRRPGEDQGIAAAAGVGSETLEEAMAGETAQAEPAPRAVEATTAATAEPSREVITVAETE
APLPVVASTAEAVPAEVEEAPMPVRAIAAAAPAEAVADAAPTVEEIATIEAAPTAQTEEA
PAEVVAPAEEAAVAPAAALAEAVQPTPVEAEAAPLVVEQAATAEAQEIAHAPSAPIDLGS
SLAESGLVMIETSSEKVQAFTESHADEAPARPLGRRPRPSLVITDEPLQQVETQKPH
NT seq
2874 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcatgcttttcaatgcgacgcaggccgaggaactgcgcgtcgcaatcgtggat
ggtcagaaactgatcgacctcgatatcgaatcggccgccaaggaacaacgcaagagcaat
atctacaaagccgtcatcacgcgcatcgagcccagtctcgaagcggcgttcgttgattac
ggctcggagcggcatggttttctgccgttcaaggaaatatcccgctcctacttcgcgccc
ggcgtcgatgctggcaaggcgcgcattcaggacgcgctcaaggaaggccaggaactcatc
gtccaggtcgagaaggacgagcgcggcaacaagggcgcggccctgaccacctacatctcg
ctggcgggacgctacctggtcctgatgccgaacaacccccgtgggggtggcgtttcgcgg
cgcgtcgagggtgacgagcgcagcgaactgcgtgaagtcatggatcagctcgaagtcccc
cccggcatgagcctgatcgcgcgcaccgcggcgatcggccgcaacgccgaggaactgcag
tgggacctcaactacctgctgcagttgtggcgcgcgatcgacggtgccgcgcagtcgcag
tctggcgcgttcctgatctaccaggaaggcagcctcgtgattcgcgcaatccgcgactac
ttccagccggacatcggcgagatcctgatcgacaccgatgacgtgtacgagcaggccctc
cagttcatggcccatgtgatgccggccaacgtcaatcgcgtgaagcggtacaacgacgat
gtgccgctgttctcgcgctttcagatcgagcatcagatcgagtccgcctactcgcgccag
gtgagcctgcccagcggcggcgcggtcgtgatcgaccataccgaagccctcgtctccatc
gacgtaaactccggccgctcgaccaagggcgcggatatcgaggaaacggccttccgcacc
aacctcgaggcggccgaagaaattgcacgccagctccgtctgcgagacctcggcggcctg
atcgtcatcgacttcatcgacatggagtcgcagaagaatcagcgcgaggtcgagaaccgc
ctgcgtgacgcgctgcgccacgaccgcgcgcgcgtccagaccggcaagatcagccgcttc
ggcctgcttgagctttcgcgccaacgcctgcgccccgcgctggcggaaacgagctacatc
ccctgcccgcgctgcaacggcaccggccacatccgcagcacggaatcgtccgcgctgcac
atcctgcgcatcctcgaagaggaagcgatgaaggaaaacaccggcgcagtgcatctgcag
gtgccggtggatgtcgcaaccttcctcctcaacgagaagcgttcggacattgcacacatc
gagtaccggcacaagatccagctgatcatcattcccaaccgccacctcgagacgccgcac
cacgagatcatccgcctgcgccacgaccagctgaatctggaagaactggcactcgccagc
taccagatggtcggcaagcccgcagaagtcgacctgcgcctgccgacgaaggacgacaag
aagccggcccgcgccgaagccgtagtgaagggcatcgcccctgcgcagcccgcgccggtg
gtggagcctaagcccgagcctgctgccgctccggctgccgagcctggcctgtttgcgcgc
ctctttgcgtggctgcgcggcgagaagacgaccccggctccgcaacccgcggaagaagca
cagtcgaagcgcgaggcgcgtccccgcggcgaacgcggggagaatcgccgcggcggcaac
aaccgcaaccgccgtgaaggccagcgcgccgaacgtgaggaaccttcgcagcccacccgc
agcaacggcagaggcgaacaacggcaagagcgccaggagcgtaccgaacgggccgagcgt
cccgaacgggcggaacgccaggaacgcgccgaacgcgcagagcgtcccgaagctgcggag
cgcagcgaaggccgccggcagcgcggaccgcgccagcccaagcctgtcgaggccgtcgaa
aacgcagccgaacaacaagtcgtagaggccgtcgcagtaaccggcgtgaccgaaacggcc
gcaccgacgggcgaggaaggcacgccggagaagcgccgccgccgcagccgcggtcgccgg
gaccgtcgcccaggcgaagaccagggaattgcggccgcagcgggagtcggcagtgagacc
ctcgaagaggcaatggcaggcgaaaccgcacaggcggagccggccccgcgagcggtcgag
gcgacaacagccgcaaccgccgaaccttcccgcgaggtgatcactgtcgccgaaaccgag
gcgccgctgcctgtcgtcgccagcacagcggaagcggtgcctgccgaggtcgaagaagcg
cccatgcctgttcgtgcaatcgcagcggcagcacccgccgaggcggtagccgatgccgca
ccgaccgtcgaggaaatagcgacaatcgaagcggcgccgacggcacaaaccgaagaggcg
ccagccgaagtcgtcgcaccggcagaggaagccgctgtggcgcccgcggcggcgcttgcc
gaagccgtgcaaccgactccagtggaagccgaggcagcccccctagtcgtcgagcaggcc
gccacggccgaggcgcaggaaatcgcgcacgcgccgtccgcaccgatcgatctcggcagc
tcgctggcggagagtggcctcgtgatgatcgaaacgagcagcgaaaaggtccaggccttc
accgagtcccatgccgatgaggcacctgcccgtccgcttggccggcgtccgcggccttcg
ctcgtgatcaccgacgagccgctgcagcaggttgaaacccaaaaaccgcactga
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