Azoarcus sp. CIB: AzCIB_4013
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Entry
AzCIB_4013 CDS
T04019
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
azi
Azoarcus sp. CIB
Pathway
azi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
azi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AzCIB_4013
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
azi03021
]
AzCIB_4013
03400 DNA repair and recombination proteins [BR:
azi03400
]
AzCIB_4013
Enzymes [BR:
azi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AzCIB_4013
Transcription machinery [BR:
azi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AzCIB_4013
DNA repair and recombination proteins [BR:
azi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AzCIB_4013
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
AMIN-like
Motif
Other DBs
NCBI-ProteinID:
AKU13906
LinkDB
All DBs
Position
complement(4477102..4478082)
Genome browser
AA seq
326 aa
AA seq
DB search
MQSNSLLKPRIIDVQSVSPVQARVTMEPFERGFGHTLGNALRRILLSSLPGYAPTEVSIE
GVLHEYSTLDGVREDIVDLLLNLKGVVLKLHNRGEATLRLSKSGDGVVTARDIEAGHDVE
IINPDHVIAHLAPGGKLDMQIKVEEGRGYVPGNVRPVAGESKSIGHVVLDASFSPVRRVS
YLVESARVEQRTDLDRLVIDIETNGAVDPEEAIRYAARVLMDQLSVFADLEGTAPVAEVA
TTQVIDPVLLRPVDDLELTVRSANCLKAENIYYIGDLIQRTETELLKTPNLGRKSLNEIK
EVLASRGLTLGMKLENWPPAGLEKLG
NT seq
981 nt
NT seq
+upstream
nt +downstream
nt
atgcaaagcaattcactgctgaaaccccgcatcatcgacgtccagtccgtgtcgcccgtt
caggcgcgcgtgacgatggagccgttcgagcgtggtttcggtcataccctggggaatgcg
ctgcggcgcatcctcctttcctcgctgccgggctatgcgccgacggaagtctcgattgag
ggcgtgctgcacgagtactcgactctggacggggtgcgcgaggacatcgtcgacctgttg
ctgaacctgaagggcgttgtgctgaagctgcacaaccgcggtgaggccacgctgcgcctg
tcgaagtcgggtgacggtgtcgtcaccgcgcgcgacatcgaggctggtcacgacgtcgag
atcatcaacccagatcacgttatcgcgcacctggctcctggcggcaagctcgacatgcag
atcaaggtcgaggaaggtcgcggttacgtgccgggtaatgtgcgtccggtcgccggcgag
agcaagagcatcggtcatgtcgtgctggacgcgtcgttcagcccggtgcgccgggtgagc
tatctggtcgagagtgctcgtgtcgagcagcgtaccgatcttgatcgcctggtgatcgat
atcgagaccaacggcgcggtcgaccccgaagaggctatccgttacgccgcgcgcgtgctg
atggatcagctgtcggtgttcgcggatctggaaggtacggcgccggtcgcggaagtggcc
acgacgcaggtgatcgatccggtgctgctgcgtccggttgatgacctcgagctgaccgtg
cggtcggccaactgcctgaaggccgagaacatctactacatcggcgatctgatccagcgt
acggaaaccgagctgctgaagaccccgaacctcggccgcaagtcgctgaacgaaatcaag
gaagtgttggcctcgcgtgggcttacgctcggcatgaaactggaaaactggccgccggcc
gggcttgagaagctcggttga
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