Azospirillum sp. B510: AZL_005310
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Entry
AZL_005310 CDS
T01169
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
azl
Azospirillum sp. B510
Pathway
azl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
azl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AZL_005310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
azl03019
]
AZL_005310
03009 Ribosome biogenesis [BR:
azl03009
]
AZL_005310
Enzymes [BR:
azl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AZL_005310
Messenger RNA biogenesis [BR:
azl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AZL_005310
Ribosome biogenesis [BR:
azl03009
]
Prokaryotic type
rRNA processing factors
AZL_005310
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
BAI71169
LinkDB
All DBs
Position
complement(605878..609021)
Genome browser
AA seq
1047 aa
AA seq
DB search
MAKRMLVDATHPEETRVAVVSGNRLEELDFEIASRKQLKGNIYLAKVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYRIPMADREALLAEERRLEEQAEARAEAAADGAVMAEPIRPE
QVVEEWSPMPSPIAAEASDEAGDEENGGEDAAEEGETGEERAAPGAAAQPAEAPDMVGGD
EDEEAETQRRRSRPLRSYKIQEVVKRRQVMLVQVTKEERGNKGAALTTYLSLPGRYCVLM
PNTGRGGGISRKITNPADRKRLKEILSDLDIPDGMAVILRTAGLERSKPEIKRDLEYLLR
LWDDIREQTLKSSAPCLIYEEANLIKRSIRDLYSNDIDEIWVEGEAGFRTAREFMDMLMP
GHSQRVQLYRDSQIPLFHRYQVETQIDAIHSPVVQLRSGGYIVINPTEALVSIDVNSGKS
TRERNIEETAYKTNLEAADEVARQLRLRDLAGLIVIDFIDMEEPRNNAAVERRMKEAMKN
DRARIQLGRISAFGLLELSRQRLRPSLLETNFERCPHCSGTGVVRSVESASLHVLRAIEE
EGIRKRSAEISIYVPTSIALYILNQKRGELAKIEERHAFSVMVQADDSLIAPDHRLERNK
ARLPDEDGPLVSADRVMAETDRALAAEPVEPAEEPEVEAEAVQAEEAGERAETVGANGDG
TGEDRRRRRRRRRGRGRDREDGRVEGESAEGEAEMDEAGQETDEDADLADQPVGLPADLP
VAAEAISTVAISEPATDSDGESDDADEDEGEDEFGADAGDRNGEGRKKRRRGKRGGRRRS
RRDGVEGVDGGEEVVTTAETAAVPAAPVPAAPVPATAEASDLDWILAGDTAPEAEDVPVP
VPAAEPPVTAPAPAEAAKAPARKASRKRKAAAEAPAEAAPAAAAPVATPVVAPVVAEAPA
RGRKRKAAVAPVEAPVEAAPAPVTEAAPAKKASRKRKAAAEAPAEAAPVATPVIAPVVAE
APARGRKRKVAAAPVEAPVEAAPAPAAEATPARKASRKRKAAAEAPAEAAPVAAPVVAEA
PAPASEPDAAPAETEADAKPRRGWWKR
NT seq
3144 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcgcatgctggtggacgccacgcacccggaggaaacccgggtcgccgtggtc
agtgggaaccggctggaagaactcgacttcgagatcgccagccgcaagcagttgaagggc
aacatctacctggcgaaggtgacgcgggtcgagccctcgctccaggcggccttcgtggaa
tatggcgggaaccgccacggcttcctcgccttctccgaaatccatcccgactattaccgc
atcccgatggccgaccgcgaggccctgctggccgaggagcgccggctggaggagcaggcg
gaggcccgggccgaggccgccgccgacggcgccgtgatggccgagccgatccgccccgaa
caggtcgtcgaggaatggtcgccgatgccctcccccatcgccgccgaggcgtcggatgag
gcgggcgacgaggagaatggcggcgaggacgccgccgaggagggcgagaccggcgaggag
cgggccgcccccggggccgccgcccagcccgccgaggcccccgacatggtcggcggcgac
gaggacgaggaggcggaaacccagcgccgccgctcgcgcccgctgcgttcctacaagatc
caggaagtggtgaagcgccggcaggtcatgctggtgcaggtgacgaaggaggagcgcggc
aacaagggggccgccctgaccacctatctctcgctgcccggccgctactgcgtcctgatg
cccaacaccggccgtggcggcgggatttcccgcaagatcaccaacccggccgaccgcaag
cgcctgaaggaaatcctgtccgacctggacattcccgatggcatggcggtcatcctgcgc
accgccggtctggagcgttccaaacccgagatcaagcgcgacctggaatatctgctgcgc
ctgtgggacgacatccgcgaacagacgctgaagtcgtcggcgccctgcctcatctatgaa
gaggcgaacctgatcaagcggtcgatccgcgacctctattccaacgacatcgacgagatc
tgggtcgagggcgaggccggcttccgcacggcgcgcgagttcatggacatgctgatgccg
ggccattcccagcgcgtccagctctaccgcgacagccagatcccgctgttccaccgctat
caggtggaaacccagatcgacgccatccacagcccggtggtgcagctgcgctccggcggc
tacatcgtcatcaacccgaccgaggcgctggtctccatcgacgtcaactccggcaaatcg
acccgcgagcgcaacatcgaggaaaccgcctacaagaccaacctggaggccgccgacgag
gtggcgcgccagctgcgtctgcgcgatctggccggcctgatcgtcatcgacttcatcgac
atggaggagccgcggaacaacgccgccgtcgagcgccgcatgaaggaggcgatgaagaac
gaccgggcgcgcatccagctcggccgcatctccgccttcggcctgctggagctgtcgcgc
cagcgtctgcgcccgtcgctgctggagaccaacttcgagcgctgcccgcactgctcgggc
accggcgtcgtccgctcggtcgaatccgcctcgctgcacgtcctgcgcgccatcgaggag
gagggcatccgcaagcggtcggccgagatcagcatctatgtgccgacctcgatcgcgctc
tacatcctgaaccagaagcgcggtgagctggccaagatcgaagagcgccacgccttcagc
gtcatggtccaggccgacgacagcctgatcgccccggaccatcgtctggagcgcaacaag
gcccgcctgcccgacgaggacggtcctctggtcagcgccgaccgcgtgatggccgagacc
gaccgcgcgctcgccgccgagccggtcgagccggcggaggagccggaggtcgaagccgaa
gccgtccaggccgaagaggccggcgaacgcgccgagaccgtcggcgccaacggcgacggt
accggcgaggatcgccgccgccgccgccgccgccgccgcggtcgtggccgtgaccgcgag
gacggccgcgtcgaaggcgagagcgccgagggcgaggccgagatggacgaggccggtcag
gagaccgacgaggacgccgacctggccgatcagcccgtcgggctgccggccgaccttccg
gttgccgccgaggcgatctccaccgtcgccatctccgagcccgccaccgactccgacggc
gagagcgacgatgccgacgaggatgagggtgaggacgagttcggcgccgatgccggtgat
cgcaacggcgaaggccgcaagaagcgtcgccgcggcaagcgcggtggccgccggcggtcg
cgtcgcgacggtgtggagggtgtggacggtggcgaggaggtcgtgaccacggccgagacc
gccgcggttccggccgccccggttccggccgccccagttccggccacggccgaggcgtcc
gacctcgactggatcctggccggcgacacggctcccgaagccgaggatgtcccggtgccg
gtgcctgccgccgaaccgccggtgaccgccccggctccggccgaagcggccaaggctccg
gccaggaaggcgtcgcgcaagcgcaaggccgccgccgaggctccggccgaagcggcgccg
gccgctgccgcgccggtcgccaccccggtggttgccccggtggttgccgaggcccccgcc
aggggccgtaagcgcaaggccgccgtcgctccggtcgaggctccggtggaggccgctccg
gcccccgtcaccgaggccgcgccggccaagaaggcgtcgcgcaagcgcaaggccgccgcg
gaggccccggccgaggccgcgccggtcgccaccccggtgattgccccggtggttgccgag
gcccccgccaggggtcgcaagcgcaaggtcgccgccgctccggtcgaggctccggtggaa
gcagctccggcccccgccgccgaggccactccggccaggaaggcgtcgcgcaagcgcaag
gccgccgccgaggccccggccgaagcagcgccggtcgcggctccggtggttgccgaggcg
cccgccccggccagcgagcccgacgccgcaccggcagagaccgaggctgacgccaagccg
cgccgcggctggtggaagcggtaa
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