Azospirillum sp. B510: AZL_025880
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Entry
AZL_025880 CDS
T01169
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
azl
Azospirillum sp. B510
Brite
KEGG Orthology (KO) [BR:
azl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
azl03019
]
AZL_025880 (hrpB)
Enzymes [BR:
azl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AZL_025880 (hrpB)
Messenger RNA biogenesis [BR:
azl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AZL_025880 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
CON_HrpB
HA2_N
AAA_30
Flavi_DEAD
ResIII
AAA_19
Motif
Other DBs
NCBI-ProteinID:
BAI73226
UniProt:
D3NXU7
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All DBs
Position
2953405..2955996
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AA seq
863 aa
AA seq
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MSKPAFPALPIDPVLPALLEALDRRGTAVLQAPPGAGKTTRVPLALLDAGWLKGRKILVL
EPRRLAARAAARRMAAMLGEAVGETVGYRVRLDTKVGPRTRIEVVTDGLFLRQLQEDPEL
PAVGAVLFDEFHERGIDSDLALALVQEARGALRDDLRLVVMSATLDAAPVATLLADMQGP
AAMVTSKGRAYPVETRHLDAPTPTGRLDGARIEDAVAAAVRRALREEPGNALVFLPGVGE
IRRVQSLLEQSELGPDVILAPLYGDLSAEAQDRAIAPTPPGQRKIVLATSIAETSLTIEG
IRIVVDSGLMRVPRFDPRGGMTRLATVKVSQASAEQRRGRAGRLEPGVCYRLWPEATHKA
LAPFTTPEIADADLAPLALELAVWGVRDPAGLSWLDQPPAAAMAQARELLTGLGGLDKSG
AITPHGRRMAGFGVHPRLAHMMLAGKAMGQGALACLVAALLGERDIVRSQPGFRDADLRL
RVDLLRGEERGGFGAARGLGVDRGGAQQAVKQARQWRRQLGVRDDDAMDSQAVGLLVALA
YPDRIGQRRPGGQGGGQPGGVAAQYRLSGGRGAYFQQAEPLSAEEWLAIADLDGAARESR
IFLAAPVTLADLEESFADDIRSETIVAWDAREQMVLARRRRMLFALILKDEKLAKPPAEA
MTAAMIEGIRALGPACLPWTDELRKWRTRVMFLRGREGDAYDWPDLSDDALMDGLEAWLA
PFLDGVSRRAHLERIDLSSALRALLPWELRTRLDAEAPTHVEVPSGSRIPIDYDGEEPVL
AVRLQEMFGLAETPRIAGGRVPLLLHLLSPARRPVQVTRDLASFWANAYKAVKADLKGQY
PKHYWPDNPLEAEPTARAKPRGR
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagcccgccttccccgccctgccaatcgatcccgtcctgcccgccctgctggag
gcgctggaccgccgcggcaccgccgtgctgcaagccccgcccggcgccggcaagacgaca
cgggtgccgctggccctgctcgacgccggctggctgaagggccgcaagatcctggtgctg
gagccccggcggctcgccgcccgcgccgccgcccgccggatggcggcgatgctgggggag
gcggtgggcgagaccgtcggctaccgcgtccgcctcgacaccaaggtcggcccgaggacc
cggatcgaggtggtgaccgacggcctgttcctgcgccagcttcaagaggatccggagctt
cccgccgtcggcgccgtcctgttcgacgagttccacgaacgcggcatcgacagcgacctc
gcccttgccctggtgcaggaggcgcgcggggcgctgcgcgatgatttgcgccttgtcgtg
atgtcggcgacgctggacgccgccccggtcgccactcttctcgcggacatgcaagggccc
gccgcgatggtgaccagcaagggccgcgcctacccggtcgagacccgccacctcgacgcg
ccaacgcccacaggaagactggatggcgcccgcatcgaggacgcggtggccgccgccgtc
cgccgcgcgctccgcgaggagcccggcaacgccctggtcttcctgcccggcgtcggcgag
atccgccgcgtccagtccctgctggaacagtccgagctgggaccggacgtcatcctcgcc
ccgctctatggcgacctgtcggccgaggcgcaggaccgcgccatcgctccgaccccaccc
ggccagcgcaagatcgtgctggcgacctcgatcgccgagaccagcctgaccatcgagggc
atccgcatcgtggtcgacagcgggctgatgcgggttccgcgtttcgacccgcgcggcggc
atgacccggctcgcgacggtgaaggtcagccaggcctcggccgaacagcgccgcggccgc
gccggccgtctggagcccggcgtctgctaccgcctgtggccggaggcgacgcacaaggcg
ctggcccccttcaccacgccggagatcgccgacgccgacctcgccccgctggcgctggag
cttgcggtgtggggtgtccgcgaccccgccggcctgtcctggctcgaccagccgccggcc
gcggcgatggcccaggcgcgcgagctgctgaccggcctcggcggtctcgacaagtccggc
gccatcaccccgcacggccgccgcatggccggcttcggcgtgcatccgcgtctggcccac
atgatgctggccggcaaggcgatgggccagggcgcgctcgcctgtctggtcgccgccctg
ctgggcgagcgcgacatcgtccgctcccaaccgggcttccgcgatgccgacctgcgcctg
cgcgtcgatctgctgcgcggcgaggagcgcggcggctttggcgcggcgcgcggcctcggc
gtcgaccgcggcggcgcccagcaggcggtcaagcaggcgcggcagtggcgccgccagctc
ggcgtgcgcgacgatgacgcgatggactcgcaggccgtcggccttctggtggcgctggcc
tatcccgaccgcatcggccaacgccgccccggcggccagggcggcggccaaccgggcggt
gtggcggcgcaatatcgcctgtcgggcgggcgcggcgcctatttccagcaagccgagccg
ctgtcggccgaggagtggctcgccatcgccgacctcgacggcgccgcccgcgagtcgcgc
atcttcctggccgccccggtgacgctggccgatctggaggagagcttcgccgacgacatc
cgcagcgagaccatcgtcgcctgggacgcgcgcgagcagatggtgctggcgcggcggcgg
cgcatgctgttcgcgctgatcctgaaggacgagaagctggccaagccgccggccgaggcg
atgaccgccgcgatgatcgagggcatccgcgcgctgggcccggcctgcctgccctggacc
gacgagctgcgcaaatggcgcacccgcgtgatgttcctgcgcggccgcgaaggcgacgct
tacgactggcccgacctgtccgacgacgccctgatggacggtctggaggcgtggctggcc
cccttcctcgacggcgtgtcgcgccgcgcccatctggagcgcatcgacctgtcgagcgcg
ctccgcgccctgctgccctgggagttgcggacccgcctggacgccgaggccccgacccat
gtcgaggtgccgagcggctcccgcatccccatcgactatgacggcgaggagccggtgctg
gcggtgcggttgcaggagatgttcggcctggccgagaccccgcgcatcgccggcggccgg
gtgcccttgctgctgcacctgctgtcccccgcccgccgcccggtccaggtcacccgcgac
ctcgcgagcttctgggccaacgcctacaaggcggtgaaggcggatttgaagggccagtac
ccgaaacattactggcccgacaacccgctggaggccgagccgaccgccagggcgaagccg
cggggacggtga
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