Azospirillum ramasamyi: DM194_01345
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Entry
DM194_01345 CDS
T05500
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
azm
Azospirillum ramasamyi
Pathway
azm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
azm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DM194_01345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
azm03019
]
DM194_01345
03009 Ribosome biogenesis [BR:
azm03009
]
DM194_01345
Enzymes [BR:
azm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
DM194_01345
Messenger RNA biogenesis [BR:
azm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DM194_01345
Ribosome biogenesis [BR:
azm03009
]
Prokaryotic type
rRNA processing factors
DM194_01345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AWU93018
UniProt:
A0A2U9S557
LinkDB
All DBs
Position
complement(296021..299089)
Genome browser
AA seq
1022 aa
AA seq
DB search
MAKRMLVDATHPEETRVAVVNGNRLEELDFEIASRKQLKGNIYLAKVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYRIPVADREALLAEERRLEEQAEARAEAAADGAVMGEPIRPE
QVVEEWSPMPSPIAPEASDEDAGDEDDEEENGVDENGAGEHSAPSEGAVPSADAPDMLGG
DEDEEVETQRRRSRPLRSYKIQEVVKRRQVMLVQVTKEERGNKGAALTTYLSLPGRYCVL
MPNTGRGGGISRKITNPADRKRLKEILSDLDIPDGMAVILRTAGLERSKPEIKRDLEYLL
RLWDDIREQTLKSSAPCLIYEEANLIKRSIRDLYSNDIDEIWVEGEAGFRTAREFMDMLM
PGHSQRVQLYRDSQIPLFHRYQVETQIDAIHSPVVQLRSGGYIVINPTEALVSIDVNSGK
STRERNIEETAYKTNLEAADEVARQLRLRDLAGLIVIDFIDMEEPRNNAAVERRMKEAMK
NDRARIQLGRISAFGLLELSRQRLRPSLLETNFERCPHCSGTGVVRSVESASLHVLRAIE
EEGIRKRSSEITIYVPTSIALYILNQKRGELAKIEERHNFHVMVQADDGLIAPDHRLERN
KARLPDEDGPLVSADRAMAETDRALAAEPVVAPVEEETDVETAQAEEAGERAEANGANGE
GNGEDRRRRRRRRRGRGRDREEGRVEGDTAGVGEDAEETEETGDETVGTALPVAAEAIPG
AAISEPAEDDDSDEDDNEGEGEGEGDEETGADADDRNGDGRKKRRRGKRGGRRRSRREGM
EGLEGGEETAAEQSPAAPAEAAPVQTPAETSDLDWILAGESAPAPVEEEAPVPVPATEPP
VTATAPAEAAEPVAEKAPAKKASRKRKAAAEAPVEAAPAVAEAPAKGRKRKAAAPVEAPA
QAAAEPVTEKAPAKKASRKRKAAAEAPVEAAPAVIEAPAKSRKRKAAAAEAPAEVATDAA
PAKKASRKRKAAAEAPAEAAPAAAPAAPEPAPAAASEPAATPAAAGDDGDASAKPRRGWW
KR
NT seq
3069 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcgcatgctggtggacgccacgcacccggaggaaacccgggtcgccgtggtc
aatggtaaccggctggaagaactcgacttcgagatcgccagccgcaagcagctgaagggc
aatatctacctcgcgaaagtgacgcgggtcgagccttcgctccaggcggccttcgtggaa
tatggcggaaaccgccacggcttcctcgccttctccgaaatccaccccgactattaccgc
atccccgtcgccgaccgcgaagccctgctggccgaagagcgccggttggaggagcaggcg
gaagcccgcgccgaggccgccgccgacggcgccgtgatgggcgagccgatccgccccgag
caggtggtcgaggaatggtcgccgatgccctcccccatcgcgccggaggcgtccgacgag
gatgccggcgacgaggacgacgaggaagagaacggcgtagacgagaacggtgccggcgag
cactccgccccgtccgaaggcgccgtcccctccgcggacgcccccgacatgctgggcggc
gacgaggatgaagaggtcgagacccagcgccgccgctcgcgcccgctgcgctcctacaag
attcaggaagtggtgaagcgccggcaggtcatgctggtgcaggtgacgaaggaggagcgc
ggcaacaagggcgccgccctgaccacctacctgtcgctgcccggccgctactgcgtcctg
atgcccaacaccggccgcggcggcgggatttcccgcaagatcaccaacccggccgatcgc
aagcgcctgaaggaaatcctgtcggatctcgacattcccgacggcatggcggtcatcctg
cgcaccgccggcctggagcgttccaagcccgagatcaagcgcgacctggaatatctgctg
cgcctgtgggacgacatccgcgaacagacgctgaagtcttccgcgccctgcctcatctat
gaagaggcgaacctgatcaagcggtcgatccgcgatctgtactccaacgacatcgacgag
atctgggtcgagggcgaggccggcttccgcacggcgcgcgagttcatggacatgctgatg
ccgggccattcccagcgcgtccagctgtaccgcgacagccagatcccgctgttccaccgc
tatcaggtggaaacgcagatcgacgccatccacagcccggtggtgcagctgcgctccggc
ggctacatcgtcatcaacccgaccgaggcgctggtttccatcgacgtcaactccggcaag
tcgacccgcgagcgcaacatcgaggaaaccgcctacaagaccaacctggaggccgccgac
gaggtggcgcgccagctgcgtcttcgcgatctggccggcctgatcgtcatcgacttcatc
gacatggaggagccgcgtaacaacgccgccgtcgagcgccgcatgaaggaggcgatgaag
aacgaccgggcgcgcatccagctcggccgcatctccgccttcggcctcctggagctgtcg
cgtcagcgtctgcgcccgtcgctgctggagaccaacttcgagcgctgcccgcactgctcc
ggcaccggcgtcgtccgttcggtcgagtccgcctcgctgcacgtcctgcgcgccatcgag
gaagagggtatccgcaagcggtcgtcggagatcaccatctacgtcccgacctccatcgcg
ctctacatcctcaaccagaagcgcggtgagctggccaagatcgaggaacgtcacaacttc
cacgtcatggtccaggccgacgacggcctgatcgcccccgaccaccgtctggagcgcaac
aaggcccgcctgcccgacgaggacggtccgctggtcagcgccgaccgcgctatggccgag
accgaccgtgcgctcgccgccgagccggtcgtcgcgccggtcgaggaggagaccgacgtc
gagaccgcccaggccgaggaagccggcgagcgcgccgaggccaatggcgccaatggcgaa
ggcaatggcgaggatcgccgtcgccgccgtcgtcgccgccgtggccgtggccgtgaccgc
gaggaaggccgcgtcgaaggcgataccgccggtgttggcgaggacgccgaggaaaccgag
gagacgggcgacgagactgtcggaaccgccctgccggttgccgccgaggcgatccccggc
gcggccatctccgagccggccgaagacgacgactcggacgaggacgacaacgagggcgag
ggcgagggcgagggcgacgaggaaaccggcgccgacgccgacgatcgcaacggcgacggc
cgcaagaagcgccgccgcggcaagcgcggtggtcgccgccggtcccgccgcgagggtatg
gaagggctggagggcggcgaggaaaccgctgccgaacagtcgcccgccgctccggccgaa
gccgctcccgtccagactccggccgagacgtccgacctcgactggatcctggccggcgag
agcgctccggcacccgtcgaggaggaggccccggttccggtgcctgcgaccgagccgccg
gtcaccgccacggccccggccgaagccgccgaacccgtcgccgagaaggctccggccaag
aaggcgtcgcgcaagcgcaaggccgctgccgaggctccggtcgaggccgctccggccgtc
gccgaagcgccggcaaagggccgcaagcgcaaggccgccgctccggtcgaagccccggcg
caagctgcggccgaaccggtgacggagaaggccccggccaagaaggcgtcgcgcaagcgc
aaggccgctgccgaggctccggtcgaggccgctccggccgtcatcgaagcgccggcgaag
agccgtaagcgcaaggccgccgccgcggaagccccggccgaggtcgcgaccgacgcggct
ccggccaagaaggcgtcgcgcaagcgcaaggccgccgccgaagctccggccgaagccgct
cccgccgccgccccggcagcgcccgagccggctccggcagccgcttcggaacctgccgcg
actcctgctgcggccggcgatgacggcgatgcctccgccaagccgcgccgcggttggtgg
aagcggtaa
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