Azoarcus olearius BH72: azo1673
Help
Entry
azo1673 CDS
T00441
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
azo
Azoarcus olearius BH72
Pathway
azo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
azo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
azo1673 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
azo03400
]
azo1673 (mfd)
Enzymes [BR:
azo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
azo1673 (mfd)
DNA repair and recombination proteins [BR:
azo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
azo1673 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
CTE_SPB4
AAA_16
AAA_30
Glyco_tran_WecG
AAA_22
Motif
Other DBs
NCBI-ProteinID:
CAL94290
UniProt:
A1K635
LinkDB
All DBs
Position
complement(1836734..1840186)
Genome browser
AA seq
1150 aa
AA seq
DB search
MPRSFDSLLPAIARLAFPKPGTRLDLPALAGSADALAIAQLAGQGRMIAVITANPIDAQR
LQDELAWVAPDLRSHLLPDWETLPYDSFSPHQDLISERLSTLYAVSRGEVDVVLVPAPTA
LYRLAPPAYLAAYTFFMKQGDRLDVEALRKQMALAGYAHVTQVVSPGEFSVRGGLVDLYP
MGSALPYRIDLFDDEVESIKTFDPDSQRTVYPTKEIRLLPAREFPLDDKGRTHFRSRFRE
SFEGDPTRAAVYKDVSNGIAPAGIEYYLPLFFDETATLFDYLPTDVPVLLHRDVPGAIAE
FWRDTRSRYDLLKGDRSRPVMPPEQLFLSEEAFFLALKDRPRIAIGADSKLADAALPLPE
LAVERKATDPLHKFKAFQAGEWGRDGGRILLLADSPGRRETMAEFLAEYGLKPAASADFA
GFLDTDAPLALGVAPLAAGFLLPDAKIAVVTEAELYATTARSRARRESKKAATMEGWLRD
LSELKLGDPVVHVSHGIGRYLGLIHMNLGEGDTEFLHLEYNGGDKLYVPVSQLHVITRYA
GADPEAVDLHRLGSGQWEKAKKKAAMQVRDTAAELLALYAQRAARPGHRFDFKQHDLEAF
AEAFGFETTPDQQAAIDAVVGDMKSGRPMDRLVCGDVGFGKTEVALRAAFIAVADGKQVV
VLCPTTLLAEQHYQTFADRFADWPIKIAELSRFKSAKEQAEALKQLGEGKVDIIIGTHRL
LQKDVLFKRLGLVIIDEEHRFGVRQKEALKQLRSEVDILTLTATPIPRTLGLAMEGLREF
SVIATAPQKRLAIKTFVQRWSKGIVREAVLREFKRGGQVYFLHNEVDTIENVRNELAELL
PEARIVVGHGQLPERELERVMRDFTQQRANLLLCTTIIETGINIPTANTIVINRADRFGL
AQLHQLRGRVGRSHHQAYAYLLTDAHAKPTAQAQKRLEAISMMEELGSGFYLAMHDLEIR
GAGEVLGENQSGEIQQVGFSLYTEMLKRAVKDLQAGKEPDLSQPLEVVSEINLHTPALLP
TDYCPDVQERLTLYKRLANCESEDDLRALQEELIDRFGELPPQTVALIETHRLRLLVQSR
GVQKLDASEAQISVQFGPNPPIDPAKVIFLIQKDKSTKMAGPDKLIRRANLPDLRQRVKA
VRELLDAVKL
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgccccgttcgttcgattccctgctgcccgccatcgcccgccttgcctttccgaaaccc
ggcacccggctcgacctgcccgccctggccggctcggccgacgcgctcgcaatcgcccag
ctcgcgggccagggccggatgatcgcggtgatcaccgccaacccgatcgacgcccagcgc
ctgcaggacgaactcgcctgggtggcgccggacctgcgcagccacctgctgcccgattgg
gaaaccctgccctacgacagcttctcgccgcaccaggacctgatctccgaacgcctgtcc
acgctgtacgcggtcagccgcggcgaggtggacgtggtgctggtgcccgcccccaccgcc
ctctaccgcctggcgccgccggcctacctggcggcctacacctttttcatgaagcagggc
gacaggctcgacgtggaagccctgcgcaagcagatggcgctggcgggctacgcccacgtc
acccaggtggtcagcccgggcgaattctcggtgcgcggcgggctggtcgatctctacccg
atgggctcggcgctgccctaccgcatcgacctcttcgacgacgaagtcgagagcatcaag
accttcgatcccgactcgcagcgcacggtgtatccgaccaaggaaatccgcctgctgccg
gcgcgcgagtttccgctcgatgacaagggccgcacccatttccgcagccgcttccgcgaa
agcttcgagggcgaccccacccgcgcggcggtctacaaggacgtctccaacggcatcgcg
ccggccggcatcgagtattacctgccgctgttcttcgacgagacggccacgctgttcgac
tacctgcccaccgatgttccggtgctgctgcatcgcgacgtgcccggcgcgatcgccgag
ttctggcgcgacacgcgctcgcgctacgacctgctgaagggcgaccgcagccgcccggtg
atgccacccgagcagctcttcctgagcgaggaagccttcttcctcgcgttgaaggaccgg
ccgcggatcgcgatcggagccgacagcaagctcgccgatgcggccctgccgctgccggag
ctggcggtggagcgcaaggcgaccgatccgctccacaagttcaaggccttccaggcgggt
gagtggggccgcgacggcggccgcatcctgctgctggccgattcgccgggccggcgcgag
acgatggccgagtttctcgccgaatacggcctcaaacccgcggcgagcgccgatttcgcc
ggcttcctcgataccgacgcgccactcgcgctcggggtcgcgccgcttgccgccggcttc
ctgctgcccgacgcgaagatcgcggtggtcaccgaggccgagctgtacgccaccaccgcc
cgcagccgcgcccgccgcgagtcgaagaaggcggcgacgatggagggctggctgcgcgac
ctctccgaactcaagctcggcgatccggtggtgcatgtgtcgcacggcatcggccgctac
ctcggcctcatccacatgaacctgggcgagggcgacaccgagttcctgcacctggaatac
aacggcggcgacaagctctacgtgccggtgtcgcagctgcatgtgatcacccgctacgcc
ggtgccgacccggaggcggtcgatctgcaccgcctcggctccggccagtgggaaaaggcc
aagaagaaggcggcgatgcaggtgcgcgacaccgccgccgaactgctggcgctctacgcc
cagcgcgccgcccgcccgggccaccgtttcgatttcaagcagcacgacctcgaagccttc
gccgaggccttcggcttcgagaccacgcccgaccagcaggccgcgatcgacgcggtggtg
ggcgacatgaagtccggccggccgatggaccgcctggtgtgcggcgacgtcggcttcggc
aagaccgaagtggcgctgcgcgccgccttcatcgcggtggccgacggcaagcaggtggtg
gtgctgtgcccgaccacgctgctggccgaacagcactaccagaccttcgccgaccgcttc
gccgactggccgatcaagatcgccgagctgtcgcgcttcaagtccgccaaggaacaggcc
gaggcgctcaagcagttgggcgagggcaaggtcgacatcatcatcggtacccaccgcctg
ctgcagaaggacgtgctgttcaagcgcctcgggctggtcatcatcgacgaggaacaccgt
ttcggggtgcgccagaaggaagccttgaagcagctgcgcagcgaggtcgacatcctgacg
ctgaccgccacgccgatcccacgcacgctggggctggcgatggaggggctgcgcgagttc
tccgtgatcgccaccgcgccgcagaagcgcctcgcgatcaagaccttcgtgcagcgctgg
agcaagggcatcgtgcgcgaggcggtgctgcgcgaattcaagcgcggcggccaggtgtat
ttcctccacaacgaggtcgacaccatcgagaacgtgcgcaacgagctggcggagctgctg
ccggaagcgcgcatcgtcgtcggccacggccagctgccggagcgcgagctggaacgcgtg
atgcgcgacttcacccagcagcgcgccaacctgctgctgtgcaccaccatcatcgaaacc
ggcatcaacatccccaccgccaacaccatcgtcatcaaccgcgccgaccgcttcgggctg
gcccagctgcaccagctgcgcggccgcgtcgggcggtcgcaccaccaggcctacgcttac
ctgctgacggacgcccacgccaagcccaccgcgcaggcgcagaagcggctggaagcgatc
tcgatgatggaagagctgggctccggcttctacctggcgatgcacgacctggagatccgc
ggcgccggcgaggtgctgggcgaaaaccagtcgggcgagatccagcaggtcggtttcagc
ctctacaccgaaatgctcaagcgcgcggtcaaggacctgcaggccggcaaggagccggac
ctgtcgcagccgctggaggtcgtctccgagattaacctgcacaccccggcgctgctgccc
accgactactgccccgacgtgcaggaacggctgacgctgtacaagcgcctcgccaactgc
gaatccgaggacgacctgcgcgcgctgcaggaagagctgatcgaccgcttcggtgaactg
ccgccgcaaaccgtcgcgctgatcgaaacccaccgcctgcggctgctggtgcaaagccgc
ggcgtgcagaagctggacgcctccgaggcgcagatcagcgtgcagttcgggcccaatccg
ccgatcgacccggccaaggtcatcttcctgatccagaaggacaagagcaccaagatggcc
ggccccgacaagctcatccgccgcgccaacctgcccgacctgcgccagcgcgtgaaggcg
gtgcgcgaactgctggatgcggtgaagctgtag
DBGET
integrated database retrieval system
