KEGG   Azoarcus olearius BH72: azo3423
Entry
azo3423           CDS       T00441                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
azo  Azoarcus olearius BH72
Pathway
azo03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:azo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    azo3423 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:azo03021]
    azo3423 (rpoC)
   03400 DNA repair and recombination proteins [BR:azo03400]
    azo3423 (rpoC)
Enzymes [BR:azo01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     azo3423 (rpoC)
Transcription machinery [BR:azo03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     azo3423 (rpoC)
DNA repair and recombination proteins [BR:azo03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      azo3423 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Apocytochr_F_C Biotin_lipoyl_2 ApbA_C
Other DBs
NCBI-ProteinID: CAL96039
UniProt: A1KB33
LinkDB
Position
complement(3747393..3751607)
AA seq 1404 aa
MKSLLADLFKQTLPNEEEFDAITIGLASPDKIRSWSYGEVKKPETINYRTFKPERDGLFC
AKIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLSKVRRERMGHIELASPVAHIWFLK
SLPSRLGMVLDMTLRDIERVLYFEAFVVVEPGMTPLNRAQLLTEDDYLAKVEEYGDDFDA
VMGAEGIRELLRTLDVNQEIERLRSDLETTGSEAKIKKFSKRLKVLEAFQQSGIKPEWMI
LEVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPDIIVRNEKRM
LQESVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVITVG
PQLKLHQCGLPKLMALELFKPFIFNKLELMGLATTIKQAKKMVESQEPVVWDILEDVIRE
HPVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCVAFNADFDGDQMAVHVPLSLEAQM
EARTLMLASNNVLSPANGDPIIVPSQDIVLGLYYATREGVNVPGEGMLFTDVGEVKRAYE
SGQISLHARVTVRLKEFDRGPEGERIERVVRHNTTAGRAILSEILPAGLPFSVIDKPLKK
KEISKLINASFRRCGLRATVIFADQLMQYGYRLATRAGISIAVKDMLVPDLKEDLIRAAE
AEVKEIAQQYTSGLVTDGERYNKVVDIWGRCGDQVAKAMMEQLGQEPVVDRNGNTVKQEA
FNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITTNFREGLNVLQYFISTHG
ARKGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTREGFNMKALIEGGEVVEPLRER
ILGRVCAEDVVNPDTQETAIEAGTLLDEDMVDLIESLGVDEVKVRTPLTCETRYGLCAKC
YGRDLGRGAMVNAGEAVGVIAAQSIGEPGTQLTMRTFHVGGAASRAAAASGVEAKSSGTI
RFAGNMRYVANAKGEKVVIARSAEVVVADDMGRERERHKLPYGAMLLVDDGAQVKAGAQL
ASWDPHTRPIVTEYSGTVKFENVEEGVTVAKQIDEVTGLSTLVVIDSKRRSSSGAAKGVR
PQVKLLDENGEEVRIAGTDHAVAITFQVGSLITVKDGQQVSVGDILARIPQESAKTRDIT
GGLPRVAELFEARSPKDAGLLAEYTGTVSFGKDTKGKQRLVITEPDGTVHEFLIPKDKHL
MVHDGQVVNKGELIVDGPADPHDILRLQGINELARYIIDEVQDVYRLQGVKINDKHIEVI
VRQMLRRVVITDPGDTKFIREEQVERSEVLDENDRIEAEGKLPAQYENVLLGITKASLST
DSFISAASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGLAYHRSRRSQSAGE
DLGIEHAWAPIETPAEEQHDISAS
NT seq 4215 nt   +upstreamnt  +downstreamnt
atgaagagcctgctcgctgacctgttcaagcaaaccctgccgaacgaggaagagttcgac
gcgatcaccatcggtctcgcgtcgccggacaagatccgctcgtggtcctacggtgaggtg
aagaagcccgagaccatcaactaccgtaccttcaagccggaacgcgacggcctgttctgc
gccaagattttcggcccggtgaaggattacgagtgcctgtgcggcaagtacaagcgcctc
aagcaccgtggtgtgatctgcgagaagtgcggcgtcgaggtgaccctctccaaggtgcgc
cgcgagcgcatgggtcacatcgaactggccagcccggttgcccacatctggttcctgaag
agcctgccgagccgcctcggcatggtgctcgacatgaccctgcgcgacatcgagcgcgtg
ctgtacttcgaagccttcgtcgtggttgagccgggcatgaccccgctcaaccgcgcccag
ctgctcaccgaagacgactacctcgccaaggtcgaggaatacggcgacgacttcgacgcc
gtgatgggtgccgagggcatccgcgagctgctgcgcacgctcgacgtgaaccaggagatc
gaacgcctgcgttccgacctggagacgaccggttccgaagccaagatcaagaagttctcc
aagcgcctgaaggtgcttgaggccttccagcaatccggcatcaagccggaatggatgatc
ctggaagtgctgccggtgctgccgccggatctgcgcccgctggtgccgctggatggtggc
cgcttcgcgacgtccgacctgaacgacctctaccgccgcgtcatcaaccgcaacaaccgc
ctgaagcgcctgctcgaactgaaggcgccggacatcatcgtccgcaacgaaaagcgcatg
ctgcaggagtcggtggactccctgctcgacaacggccgccgcggcaaggcgatgaccggc
gccaacaagcgtccgctgaagtcgctggccgacatgatcaagggcaagggcggccgcttc
cgccagaacctgctcggcaagcgggtggactactcgggtcgttccgtgattaccgtgggc
ccgcagctcaagctgcaccagtgcggtctgcccaagctgatggcgctcgagctgttcaag
cccttcatcttcaacaagctcgaactgatggggctggcgacgaccatcaagcaggccaag
aagatggtggagtcgcaggagccggtggtgtgggacatcctcgaagatgtcatccgcgaa
cacccggtgatgctgaaccgcgcgcccacgctgcaccgtctcggcatccaggcttttgag
ccggtgctgatcgaaggcaaggcgatccagctgcatccgctggtctgcgtggcgttcaac
gccgacttcgacggtgaccagatggccgtccacgtgccgctgtcgctggaagcgcaaatg
gaagcgcgcacgctgatgctggcctccaacaacgtgctgtcgcccgccaacggcgacccg
atcatcgttccgtcgcaggacatcgtgctcggcctgtactacgcgacccgcgaaggcgtg
aacgtgccgggcgaaggcatgctgtttaccgacgtgggtgaagtgaagcgcgcctacgag
tcgggtcagatctcgctgcacgcccgcgtgacggtgcgtctgaaggagttcgaccgcggt
ccggagggtgagcgcatcgagcgcgtggtgcgtcacaacaccaccgccggccgtgccatc
ctgtcggagattctgccggcaggcctgcccttcagcgtgatcgacaagccgctgaagaag
aaggaaatctcgaagctgatcaacgcgtcgttccgccgctgcggcctgcgcgcgacggtg
atcttcgccgatcagctgatgcaatacggctaccgtctcgccacccgcgccggtatctcg
atcgcggtcaaggacatgctggtgccggatctgaaggaagacctgatccgcgccgccgaa
gccgaagtcaaggaaatcgcccagcagtacacgtcgggtctggtgaccgacggcgagcgc
tacaacaaggtcgtggatatctggggtcgctgcggcgaccaggtggccaaggcgatgatg
gagcagctcggccaggagccggtggtcgaccgcaacggcaataccgttaagcaggaagcg
ttcaactccatctacatgatggccgactccggtgcccgtggttcggcggcgcagatccgt
cagctggccggcatgcgcggcctgatggcgaagccggacggctcgatcatcgagacgccg
atcacgaccaacttccgcgaaggcctgaacgttctgcagtacttcatctcgacccacggc
gcccgtaagggtctggcggataccgcgctgaagaccgcgaactccggctacctcactcgc
cgcctggtcgacgtgacgcaggatctggtcgtcatcgaagacgattgcggcacgcgcgaa
ggcttcaacatgaaggccctgatcgagggcggtgaagtcgtcgaaccgctgcgcgaacgc
atcctcggccgcgtctgcgccgaggacgtggtcaatccggatacccaggaaaccgccatc
gaggccggcaccctgctcgacgaggacatggtcgacctgatcgaaagcctcggcgtcgat
gaggtcaaggtccgcaccccgctgacctgcgaaacgcgctacggcctgtgcgccaagtgc
tatggccgcgacctcggccgcggcgcgatggtcaatgccggcgaggccgtcggcgtcatc
gcggcccagtcgatcggcgagccgggcacgcagctgaccatgcgtaccttccacgtcggt
ggcgcggcctcccgggcggctgcggcgagcggtgtcgaagccaagtcgagcggtacgatc
cgtttcgccggcaacatgcgctacgtggccaacgccaagggcgagaaggtcgtcattgca
cgttccgccgaagtggtggtggccgacgacatgggccgcgagcgtgagcgtcacaagctg
ccgtacggcgcgatgctgctggtcgatgacggcgcccaggtcaaggccggcgcccaactg
gcctcgtgggatccgcacacccgcccgatcgtcaccgagtactccggtacggtgaagttc
gagaacgtcgaagaaggcgtgacggttgcgaagcagatcgacgaggtcaccggcctgtcg
acgctcgtggtcatcgattcgaagcgtcgctccagctccggcgccgccaagggcgtgcgt
ccgcaggtgaagctgctggacgagaacggcgaagaggtgcggatcgccggcaccgaccac
gcggtcgcgatcaccttccaggtcggctcgctgatcaccgtgaaggacggccagcaggtc
agcgtcggcgacatcctggcccgtatcccgcaggaatcggcgaagacgcgcgacattacc
ggcggtctgccgcgtgtggcggaactgttcgaagcgcgttcgccgaaggacgccggcctg
ctggccgagtacaccggtacggtttcgttcggcaaggacaccaagggcaagcagcgtctc
gtgatcaccgagccggacggcacggtgcacgagttcctgatcccgaaggacaagcacctg
atggtccacgacggccaggtggtgaacaagggcgagctgatcgtcgacggtcctgcggat
ccgcacgacatcctgcgtctgcagggcatcaacgaacttgcgcgctacatcatcgacgag
gtgcaggacgtctatcgtctgcagggcgtgaagatcaacgacaagcacatcgaggtgatc
gtccgccagatgctgcgtcgcgtcgtcatcaccgatccgggcgataccaagttcatccgc
gaggagcaggtcgagcgctcggaagtgctggacgagaacgatcgcatcgaggcggaaggc
aagctgccggcgcagtacgaaaacgtgctgctgggtattaccaaggcgtcgctgtccacc
gactcgttcatctcggcggcctcgttccaggaaaccacccgcgtgctgaccgaagcggcg
atcatgggcaagcgcgacgaactgcgtggcctgaaggagaacgtcatcgtcggtcgcctg
atccccgccggtaccggcctggcctaccaccgcagccgtcgctcgcagtcggccggagag
gacctcggcatcgagcacgcgtgggcgccgatcgaaacgcccgccgaggagcagcacgac
atttccgcgagttga

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