Azospirillum sp. TSA2s: E6C67_26120
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Entry
E6C67_26120 CDS
T10588
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
azp Azospirillum sp. TSA2s
Brite
KEGG Orthology (KO) [BR:
azp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
azp03019
]
E6C67_26120 (hrpB)
Enzymes [BR:
azp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
E6C67_26120 (hrpB)
Messenger RNA biogenesis [BR:
azp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
E6C67_26120 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
CON_HrpB
AAA_30
HA2_N
ResIII
Flavi_DEAD
AAA_19
AAA_11
Motif
Other DBs
NCBI-ProteinID:
QCG97262
UniProt:
A0A4P7Z8H1
LinkDB
All DBs
Position
1:853669..856227
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AA seq
852 aa
AA seq
DB search
MSKPAFPALPIDPVLPALLEALDRRGTAVLQAPPGAGKTTRVPLALLDAAWLKGRKILVL
EPRRLAARAAARRMASMLGETVGETVGYRVRLDTKVGPKTRIEVVTDGLFLRQLQEDPEL
PAVGAVLFDEFHERGIDSDLALALLQEARGALRDDLRLVVMSATLDAAPVATLLADAQDP
AAMVTSEGRAYPVETRHLDAPTQGTRIEDAVAAAVRRALREEPGNALVFLPGVGEIRRVQ
SLLDQSDLDPNTIIAPLYGDLSAEAQDRAISPTPPGQRKIVLATSIAETSLTIEGIRIVV
DSGLMRVPRFDPRGGMTRLATVKVSQASAEQRRGRAGRLEPGVCYRLWPEATHKALAPFT
TPEIADADLAPLALELAVWGVSDPASLSWLDQPPAAAMAQARELLTGLGGLDKAGVITPH
GRRMAGFGVHPRLAHMMLAGKAMGQGALACLVAALLGERDIVRSQPGFRDADLRLRVDLL
RGEERGGQGAARGLSVDRGGAQQAVKQARQWRRQLGVRDDDAMDSNAVGILVALAYPDRI
GQRRPGGQPGGVAAQYRLSGGRGAYFQQAEPLSAEEWLAIADLDGAARESRIFLAAPVTL
ADLEESFADDIRSETIVAWDAREQMVLARRRRMLFALILKDEKLAKPPADAMTAAMIEGI
RALGPACLPWTDELRKWRTRVMFLRAREGDVWPDLSDAALMDGLEEWLAPFLDGVSRRAH
LERIDLSSALRALLPWELRTRLDAEAPTHVEVPSGSRIPIDYDGEEPVLAVRLQEMFGLA
QTPRIAGGRVPLLLHLLSPARRPVQVTRDLASFWANAYKAVKADLKGQYPKHYWPDNPLE
AEPTARAKPRGR
NT seq
2559 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagcccgccttccccgccctgccgatcgatcccgtcctgcccgccctgctggag
gcgctggatcgccgcggcaccgccgtgctgcaggccccgccaggcgccggcaagaccacg
cgggtgccgctggccctgctcgacgcggcgtggctgaagggccgcaagatcctggtgctg
gagccgcggcgcctcgccgcccgtgccgccgcccgccggatggcgtcgatgctgggggag
acggtgggcgagaccgtcggctaccgcgtccgcctcgacaccaaggtcggcccgaagacc
cgcatcgaggtggtgaccgacggcctgttcctgcgccaactccaagaagatccggagctt
cccgccgtcggcgccgtcctgttcgacgagttccacgagcgcggcatcgacagcgacctt
gcccttgccctgctgcaggaggcgcgcggtgcgctgcgcgacgacctgcgcctcgtcgtg
atgtcggcgacactcgacgccgccccggtcgccaccctgctggccgacgcgcaagacccc
gccgcgatggtgaccagcgagggccgcgcctacccggtcgagacccgccacctcgacgcc
cccacccaaggcacccgcatcgaggacgccgtcgccgccgccgtccgccgcgccctgcgc
gaggagcccggcaacgccctggtcttcctgcccggcgtcggcgagatccgccgcgtccag
tccctgctcgaccagtccgacctcgacccgaacaccatcatcgccccgctctatggcgac
ttgtcggccgaagcgcaggaccgcgccatctcccccaccccgcccggccagcgcaagatc
gtgctggcgacctccatcgccgagaccagcctgaccattgagggcatccgcatcgtggtg
gacagcggcctgatgcgggttccgcgtttcgacccgcgcggcggcatgacccgtctggcg
acggtgaaggtcagccaggcctcggccgagcagcgccgtggccgcgccggccgtctggag
cccggcgtctgttaccgcctgtggccggaggcgacgcacaaggcgctggcccccttcacc
acgccggagatcgccgacgccgacctcgccccgctggcgctggagcttgcggtgtgggga
gtctccgaccccgccagcctgtcctggctcgaccagccgcccgccgcggcgatggcccag
gcgcgcgagctgctgaccggcctcggcggtctcgacaaagccggcgttatcaccccgcac
ggccgccgcatggccggcttcggcgtgcatccgcgtctggcccacatgatgctggccggc
aaggcgatgggccagggcgcgctcgcctgtctggtcgccgctcttctgggcgagcgcgac
atcgtccggtcccagcccggtttccgcgacgccgacctgcgcctgcgcgtcgatctgctg
cgcggcgaggagcgcggcggccagggtgccgcgcgcggcctcagcgtcgaccgcggcggc
gcgcagcaggcggtgaagcaggcgcggcagtggcgccgccaactcggcgtgcgcgacgac
gacgcgatggactcgaacgccgtcgggattctggtggcgctggcctatcccgaccgcatc
ggccagcggcggcccggcggccagcccggcggggtggcggcgcagtatcgcctgtcgggc
gggcgcggcgcctatttccagcaggccgagccgctgtcggccgaggagtggctcgccatc
gccgacctcgacggcgccgcccgcgaatcgcgcatcttcctggccgccccggtcacgctg
gccgatctggaggagagcttcgccgacgacatccgcagcgagaccatcgtcgcctgggac
gcccgcgagcagatggtgctggcgcgccgccgccgcatgctgttcgccctgatcctgaag
gacgagaagctggccaagccgccggccgacgcgatgaccgccgcgatgatcgagggcatc
cgcgccctcggccccgcctgcctgccctggaccgacgagctgcgcaaatggcgcacccgc
gtgatgttcctgcgcgcgcgggagggtgacgtgtggcccgacctgtccgacgcggccctg
atggacggtctggaggagtggctggcccccttcctcgacggcgtgtcgcgccgcgcccat
ctggagcgcatcgacctgtcgagcgccctgcgcgccctgctgccctgggagttgcggacc
cgcctggacgccgaggccccgacccatgtcgaggtgccgagcggctcccgcatccccatc
gactatgacggcgaggagccggtgctggcggttcgcctgcaggagatgttcggcttggcc
cagaccccgcgcatcgccggcggccgggttccgcttctgctgcaccttctgtcccccgcc
cgccgcccggtccaggtcacccgcgacctcgcgagcttctgggccaacgcctacaaggcg
gtgaaggcggatttgaagggccagtacccgaaacattactggcccgacaacccgctggaa
gccgagccgaccgccagggcgaagccgagggggcggtaa
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