Nitrogeniibacter mangrovi: G3580_07335
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Entry
G3580_07335 CDS
T06549
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
azq
Nitrogeniibacter mangrovi
Pathway
azq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
azq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G3580_07335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
azq03019
]
G3580_07335
03009 Ribosome biogenesis [BR:
azq03009
]
G3580_07335
Enzymes [BR:
azq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
G3580_07335
Messenger RNA biogenesis [BR:
azq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
G3580_07335
Ribosome biogenesis [BR:
azq03009
]
Prokaryotic type
rRNA helicases
G3580_07335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
HEM4
AAA_19
T7SS_ESX_EspC
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
QID17472
UniProt:
A0A6C1B1I1
LinkDB
All DBs
Position
complement(1591926..1593740)
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AA seq
604 aa
AA seq
DB search
MSHTPAPGITFADLALSAPVLKALTDVGYETPSPIQAECIPRLLAGRDLLGEAQTGTGKT
AAFALPALERIDLKQLKPQVLVLAPTRELAIQVAEAFQKYAHHLRGFHVVPLYGGQSMVV
QLRQLARGAHVIVGTPGRIMDHLERKSLVLDELRLLVLDEADEMLRMGFIDDVTWILEHT
PDARQTALFSATMPAAIRSIAHQHLREPEEVKIKAATATVAAITQRSLTVHGNRKLDALT
RILEAEESLDAAIVFVRTKVATDELAERLEARGFAAAALNGDMTQGMRERVIAQLKSGQL
DIVVATDVAARGIDVPRVSHVINYDIPYDTEAYVHRIGRTGRAGREGNAILFVTPRETRM
LKTIERATRQKIEPLTLPTRNDVTARRVAQFKQQILDVIETEELFFFNELVGQLRDEHQI
KPHVIAGALAYIAQRDKPLQLDEAAWPDIPDASRPARAPRENRDEILTKRRAYSDGKLAR
FRIEVGRMHGVTPKEIVGAIANEGGIAGKDIGQINLFEDHSTVELPGSLANEVLQRLQRT
RVCQVPIRIRIDGEGGAPERTPAPRGKFAPGGKPAFAKKPKSKPGMDKRPRPDGKFAGKK
KKRD
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcacacccccgcgcccggcatcacctttgccgacctcgccctttccgccccggtc
ctgaaggcgctgaccgatgtcggctacgaaaccccgtccccgattcaggccgagtgtatc
ccgcgcctgctggccggtcgcgatctgctcggcgaggcccagaccggcaccggcaagacc
gccgccttcgccctgccggcgctcgagcgcatcgacctgaagcagctcaaaccgcaggtg
ctggtgctggcaccgacgcgggagttggccatccaggtggccgaggccttccagaaatac
gcgcatcatctgcgtggcttccatgtggtgccgctatacggtggccagagcatggtggtg
cagctgcgccagctggcacgcggcgcccatgtgatcgtgggcacgccgggacgcatcatg
gatcacctggagcgcaagtcgctggtgctcgacgagctgcgcctgctggtgctcgacgag
gccgacgagatgctgcgcatgggcttcatcgacgacgtgacctggatcctcgagcacacc
ccggacgcacgccagaccgccctgttctcggcgaccatgccggcggccatccgcagcatc
gcccaccagcacctgcgcgaacccgaagaggtcaagatcaaggccgccaccgccacggtg
gccgccattacccagcgcagcctcacggtgcatggcaaccgcaagctcgacgccctcacc
cgcatcctcgaggcggaggaatccctcgacgccgcgatcgtgttcgtgcgtaccaaggtc
gccaccgacgagctggccgaacggctggaggcgcgcggtttcgccgccgccgcgctcaac
ggcgacatgacccagggcatgcgcgaacgggtgatcgcccagctcaagagcggccagctc
gacatcgtcgtggccaccgacgtggccgcccgcggcatcgacgtgccgcgcgtgagccac
gtgatcaactacgacatcccctacgacaccgaggcctatgtgcaccgcatcggccgcacc
ggccgtgccgggcgcgagggcaacgccatcctcttcgtcaccccgcgcgagacgcgcatg
ctcaagaccatcgagcgcgccacgcggcagaagatcgaaccgctgaccctgcccacccgc
aatgacgtgaccgcgcgtcgcgtagcccagttcaagcagcagatcctcgacgtgatcgag
actgaagagctgttcttcttcaacgagctggtcggccaactgcgcgacgaacaccagatc
aagccgcacgtgatcgccggagcgctggcctacatcgcccagcgcgacaagccgctccag
ctcgacgaggccgcctggcccgacatccccgacgcgagccgcccggcccgggccccgcgc
gagaaccgcgacgagatcctcaccaagcgccgcgcctacagcgacggcaagctcgcgcgt
tttcgcatcgaggtcggccgcatgcacggcgtgaccccgaaggagatcgtcggcgccatc
gccaacgaaggcggcatcgcgggcaaggacatcggccagatcaacctgttcgaggaccac
agcaccgtcgagttgccgggcagtctggccaacgaggtgctccagcgcctgcagcgcacc
cgcgtgtgccaggtgccgatccgcatccgtatcgatggcgagggcggtgcccccgagcgc
acgccggcaccacgcggcaaatttgcccccggcggcaagccggccttcgcgaagaaaccc
aaaagcaagccgggcatggacaagcgcccccgcccggacggcaaattcgcagggaagaag
aaaaagcgcgactga
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