Nitrogeniibacter mangrovi: G3580_13610
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Entry
G3580_13610 CDS
T06549
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
azq
Nitrogeniibacter mangrovi
Pathway
azq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
azq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G3580_13610 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
azq03019
]
G3580_13610 (rnr)
03016 Transfer RNA biogenesis [BR:
azq03016
]
G3580_13610 (rnr)
Enzymes [BR:
azq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
G3580_13610 (rnr)
Messenger RNA biogenesis [BR:
azq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
G3580_13610 (rnr)
Transfer RNA biogenesis [BR:
azq03016
]
Prokaryotic type
tRNA degradation factors
G3580_13610 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
Rho_RNA_bind
OB_Dis3
CSD
Motif
Other DBs
NCBI-ProteinID:
QID19858
UniProt:
A0A6C1BAY0
LinkDB
All DBs
Position
complement(2928036..2930234)
Genome browser
AA seq
732 aa
AA seq
DB search
MRRADPFYARECERYDNPLPSREYVVQMLTEQGRPMTMEHLARALDIREPEMPFFERRLR
AMERDGDLMRNRRDAYIIPDKVALIKGRVEGHPDGYGFLIPDEGDEDVFLGPRQMRDVLH
GDRAMVRISGVDRRGRPEGQIVEVLERGNSRIVGRVIEEHGVLIVAPENKRIARDILLAP
GRSKKVKTGDVVVVELVEQPSRYTAPIGKVVEVLGQYADPGMEVEIALRKHELPHEFSAE
AKAQTRKLPDRVRKKDMAGREDIRHLPLVTIDGETAKDFDDAVYCAREGRGYRLVVAIAD
VSHYVEPGSALDHEARERGNSVYFPRRVIPMLPEKLSNGLCSLNPQVDRLCMVCDMAIGP
TGAIKQYRFYPAVMYSHARLTYNQVAAAVFDKDPEALAVVGERLGDLKNLDKLFRVLLKA
RAKRGAIDFETTETRMIFNDEGKIERIVPESRNDAHRIIEECMLAANVCASEFLAKHRHA
ALYRVHEGPSVEKLKQLRSFMGEFGLQLGGGDDPHASDYAKLLDKVKGRPDEQLLQTVML
RSLRQAIYSPDNVGHFGLAYESYTHFTSPIRRYPDLLIHRSIKAVLQGKKYTPGDWEAIG
LACSQTERRADDATRDVEAWLKCFYMQDRIGEVFTGSVSSVVPFGLFIALDDVFVEGLLH
ISELGEDYFQYDESRHELYGERTGQRFRLSDRITVQLMRVDLETTKIDFRLVRDADQASA
PARGRRKGRARG
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atccggcgcgccgatccgttctatgcgcgcgagtgcgagcgctacgacaaccccctgccg
agccgcgagtacgtggtccagatgctgaccgagcaggggcgccccatgaccatggagcac
cttgcgcgggcgctggacatccgcgagcccgagatgccgttcttcgagcgtcgtctgcgg
gccatggagcgcgacggcgacctgatgcgcaaccggcgcgacgcctacatcattcccgac
aaggtggcgctgatcaaaggccgggtggagggtcatccggacggctatggtttcctgatt
ccggacgagggggacgaggatgtcttcctcggcccgcggcagatgcgcgatgtgctccat
ggcgaccgcgccatggtgcgcatctccggcgtggatcgccgcggtcgccccgaagggcag
atcgtcgaggtgctcgagcgtggcaattcgcgcatcgtcgggcgcgtgatcgaagagcac
ggggtgcttatcgtggcgccggagaacaagcgcatcgcccgcgacatcctgctcgcgccg
gggcgcagcaagaaggtcaagaccggcgacgtggtcgtcgtcgagctggtggagcaaccg
agccgctacaccgcccccatcggcaaggtggtcgaggtgctgggccagtacgccgatccg
ggcatggaagtggagatcgcgctgcgcaagcacgagctgccgcatgaattctcggctgag
gccaaggcgcagacccgcaagctgcccgacagggtgcgcaagaaggatatggccggtcgg
gaggacatccgccacctgccgctggtgaccatcgacggcgagaccgccaaggatttcgac
gacgcggtgtattgcgcccgcgagggccgtggctaccgcctggtggtggcgatcgccgac
gtgtcccattacgtcgagcccggctccgcgctggatcacgaagcgcgcgagcgcggtaac
tcggtgtatttcccgcgccgggtgatcccgatgctgccggagaagctctccaacgggctg
tgctcgctcaatccgcaggtggaccgcctgtgcatggtctgcgacatggccatcgggccg
accggggcgatcaagcagtatcgtttctacccggcggtgatgtactcccatgcgcgcctg
acctacaaccaggtcgccgccgccgtgttcgacaaggatccggaagcgctggccgtcgtc
ggcgagcggctcggcgatctgaagaacctcgacaagctgttccgggtgctgctcaaggcg
cgcgccaagcgcggtgcgatcgacttcgagaccaccgagacgcgcatgatcttcaacgac
gagggcaagatcgagcgcatcgtgccggagtcgcgcaacgacgcccatcgcatcatcgag
gagtgcatgctggcggccaacgtgtgtgcgtcggaattcctcgccaagcaccggcatgcg
gccctgtaccgtgtccatgaaggcccgtcggtggagaagctcaagcagctgcgcagcttc
atgggcgagttcggcctgcagctgggcggcggggacgacccccatgcctccgactacgcc
aaactgctggacaaggtgaagggccggcccgacgaacagctgctgcagacggtcatgctg
cgctccctgcgccaggccatctacagcccggacaacgtgggccacttcggcctggcctac
gagtcctacacccacttcacatcgccgatccggcgctatccggacctgctcatccaccgc
tcgatcaaggcggtgctgcagggcaagaagtacaccccgggcgactgggaggccatcggc
ctggcatgctcccagaccgagcggcgcgccgatgacgcgacccgcgacgtcgaggcctgg
ctcaagtgcttctacatgcaggatcgcatcggcgaggtcttcaccggcagcgtctcctcg
gtggtacccttcggcctcttcatcgcgctcgacgacgtgttcgtcgaagggctgctgcac
atctccgagctcggtgaagactacttccagtacgacgagtcgcgtcacgagctgtatggc
gagcgcaccgggcagcggttccgcctgtccgatcgcatcaccgtgcagctgatgcgggtc
gacctggaaaccaccaagatcgatttccggctggtgcgtgacgccgaccaggcctccgcg
ccggcccggggcagacgaaagggcagggcacgtggctaa
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