Azoarcus sp. DD4: CJ010_06245
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Entry
CJ010_06245 CDS
T06048
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
azr
Azoarcus sp. DD4
Pathway
azr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
azr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CJ010_06245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
azr03021
]
CJ010_06245
03019 Messenger RNA biogenesis [BR:
azr03019
]
CJ010_06245
Transcription machinery [BR:
azr03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CJ010_06245
Messenger RNA biogenesis [BR:
azr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CJ010_06245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
OB_RNB
S1CSD-TOTE-2
Fungal_virus_P2_C
Mor
NACHT
AAA
ATPase_2
AAA_22
AAA_19
Motif
Other DBs
NCBI-ProteinID:
QDF99652
LinkDB
All DBs
Position
complement(1322670..1323929)
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AA seq
419 aa
AA seq
DB search
MHLSELKALHVSQLLEMAVANEIEGANRLRKQELVFALLKNRARKGEPIYGDGALEVLPD
GFGFLRSPDTSYLAGTDDIYVSPSQIRRFNLHTGDTIEGEIRTPKDGERYFALVKLDKIN
GRPPEECKHKILFENLTPLHPQECLKLEREIRGEENITSRIIDMIAPIGKGQRGLLVAPP
KSGKTVMLQHIAHSITANHPDVELIVLLIDERPEEVTEMQRSVKGEVVASTFDEPASRHV
QVAEMVIEKAKRLTEHKKDVVILLDSLTRLARAYNTVVPASGKVLTGGVDANALQKPKRF
FGAARNIEEGGSLTIIATALIDTGSRMDDVIYEEFKGTGNMELHLDRRMAEKRVYPAINV
NRSGTRREELLMKPDVLQKIWILRKLLYGMDDIDAMEFLLDKVKATKSNAEFFDAMRRG
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
ttgcacctgtcggagcttaaagctctgcatgtgagccagctgctggaaatggcggttgcc
aacgaaatcgaaggcgccaatcgcctgcgcaagcaagagctcgtcttcgcgctgctgaag
aaccgcgcgcgcaagggtgagccgatctatggtgacggcgcgctcgaggtactgccggac
ggcttcggttttctgcgctcgcccgatacgtcctatctggccggcacggacgacatctac
gtgtcgccgtcgcagatcagacgcttcaacctgcacaccggcgacacgatcgaaggcgaa
atccgcacgccgaaggacggcgaacgctatttcgcactggtcaagctggacaagatcaac
ggccgaccgccggaagagtgcaagcacaagatcctgttcgaaaacctgacgccactgcat
ccgcaggagtgtctcaagctcgaacgcgagatccgcggcgaagagaacatcaccagccgc
atcatcgacatgatcgcgcctatcggcaaaggtcagcgcggcctgctcgtcgccccgccg
aaaagcggcaagacggtgatgctgcagcacattgcgcactcgatcacagcgaatcatccg
gacgtcgaactgatcgtgctgctgatcgacgagcgcccggaagaggtcaccgagatgcag
cgttcggtgaagggcgaggtcgtagcctccaccttcgacgaacccgcctcccggcacgtg
caggtggccgaaatggtcatcgaaaaggccaagcgcctgaccgagcacaagaaggacgtg
gtcatcctgctggactcgctcacccgcctggcgcgcgcctacaacacggtggtacccgcc
tccggcaaggtactgaccggcggtgtcgatgcgaacgccctgcagaagcccaagcgcttc
ttcggtgcagcgcgcaacatcgaggaaggtggctcgctgaccatcatcgccactgcgctg
atcgataccggcagccggatggacgacgtgatctacgaggagttcaagggcacaggcaac
atggagctccacctcgaccggcgcatggccgagaagcgcgtttatcccgccatcaacgtc
aatcgctcgggcacccggcgtgaagaactgctgatgaagccggacgtgctgcagaagatc
tggatcctgcgcaaactgctctacggcatggacgacatcgatgcgatggaattcctgctg
gacaaggtcaaggctacgaagagcaatgccgagttcttcgacgcgatgcgtcgcggctga
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