Azoarcus sp. DD4: CJ010_08205
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Entry
CJ010_08205 CDS
T06048
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
azr
Azoarcus sp. DD4
Brite
KEGG Orthology (KO) [BR:
azr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
azr03016
]
CJ010_08205
Enzymes [BR:
azr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
CJ010_08205
Transfer RNA biogenesis [BR:
azr03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
CJ010_08205
Prokaryotic type
tRNA splicing ligases
CJ010_08205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QDF96517
LinkDB
All DBs
Position
1756662..1758095
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AA seq
477 aa
AA seq
DB search
MDIARLRQRGPYEWELPATGRMRVPGVIFASRALIEAMDDKVREQVANVASLPGIVDASY
AMPDAHWGYGFPIGGVAAFDAGEGGVVSAGGVGFDISCGVRSLHTGLKLAEVEAVKARLA
DVLYARIPAGVGSTGALHLSAAGMDAMLRGGARWAVKEGYGSEADLARIEEHGCVAGADP
AAVSERAKKRQRDEMGTLGSGNHYLEVQIVDELFDAAAAQAYGLAAGDVLVTIHCGSRGM
GHQIGTDFLREMVVAAPKAGIALPDRELACAPLGSELGRRYLGAMRAAINCALANRQILT
HLARAAFATVLPGARLSLLYDVSHNTCKEESHVDRAGRRRRLFVHRKGATRAFGPQHAEL
PAEYRATGQPVLIGGSMGTASWVLAGAAGTEERAFGSACHGAGRAMSRNEALRRWHGGSV
VSELEARGILIRSPSLRGVAEEAPLAYKDVGAVVEAAECAGLARRVARLRPLVCIKG
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atggacatcgccagactgcgccagcgcggcccctacgaatgggagctgccggcgaccggc
cgcatgcgggtaccgggggtgatcttcgcctcgcgcgcgctgatcgaggcgatggacgac
aaggtgcgcgagcaggtcgccaacgtcgccagcctgcccggcatcgtcgatgcgtcgtac
gcgatgccggacgcgcactggggctacggctttcccatcggcggggtggcggccttcgat
gccggcgagggcggcgtggtgtcggccggcggcgtcggcttcgacatctcctgcggcgtg
cgcagcctgcacaccgggttgaagctcgccgaggtcgaggcggtgaaggcgcggctggcc
gacgtgctctatgcgcgcattccggcgggcgtgggcagcaccggcgcgctgcacctgtcc
gccgccggcatggacgcgatgctgcgcggcggggcgcgctgggcagtgaaggaaggctac
ggcagcgaggccgacctcgcccgcatcgaggagcacggctgcgtcgccggtgccgatccg
gcggcggtgtcggagagggcgaagaagcgccagcgcgatgagatgggcacgctcggttcg
ggcaaccactacctggaagtgcagatcgtcgacgagctcttcgacgccgccgccgcgcag
gcctacgggctggcggcgggcgacgtgctcgtcaccatccactgtggttcgcgcggcatg
ggccaccagatcggcaccgatttcctgcgcgagatggtggtggccgcgcccaaggccggc
atcgcgctgcccgaccgcgaactcgcctgcgcgccgctcgggtccgaactcggccggcgc
tacctcggcgcgatgcgggcggcgatcaactgcgcgctcgccaaccgccagatcctcacc
catctcgcccgcgcggcctttgccacggtgctgccgggtgcgcgcctgagcctgctgtac
gacgtgtcgcacaacacctgcaaggaggagtcgcacgtcgatcgcgccggccggcggcgg
cgcctcttcgtccaccgcaagggggcgacgcgcgccttcgggccgcagcatgccgaactg
ccggccgagtaccgtgccaccggccagccggtgctgataggcggcagcatgggcaccgcg
tcctgggtgctggccggtgccgcgggtaccgaggaacgcgccttcggttccgcctgccac
ggcgccggccgcgcgatgagccgcaacgaggctttgcggcgctggcacggcggcagcgtg
gtgagcgaactcgaggcgcgcggcatcctgatccgcagccccagcctgcgcggcgtggcc
gaggaagcgccgctcgcctacaaggacgtcggcgcggtggtggaggccgccgagtgcgcc
gggctggcgcgacgggtggcgcggctgcggccactggtgtgcatcaagggctga
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