Azoarcus sp. DD4: CJ010_09930
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Entry
CJ010_09930 CDS
T06048
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
azr
Azoarcus sp. DD4
Pathway
azr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
azr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CJ010_09930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
azr03019
]
CJ010_09930
03009 Ribosome biogenesis [BR:
azr03009
]
CJ010_09930
Enzymes [BR:
azr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CJ010_09930
Messenger RNA biogenesis [BR:
azr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CJ010_09930
Ribosome biogenesis [BR:
azr03009
]
Prokaryotic type
rRNA processing factors
CJ010_09930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
zf-C2HC
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
QDF96824
UniProt:
A0A4Y6KRB2
LinkDB
All DBs
Position
complement(2135106..2138150)
Genome browser
AA seq
1014 aa
AA seq
DB search
MKRMLFNATQAEELRVAIVDGQKLIDLDIESAAKEQRKSNIYKAVITRIEPSLEAAFVDY
GAERHGFLPFKEISRSYFQPGVDAGKASIKEALREGQELIVQVEKDERGNKGAALTTYIS
LAGRYLVLMPNNPRGGGVSRRVEGDERAELRDVMDQLEVPGGMSLIARTAAIGRNAEELQ
WDLNYLLQLWTAIEGAATSQSGAFLIYQEGSLVIRAIRDYFQPEIGEILIDTDDIYEQAR
QFMAHVMPGNVNRVKRYQDDVPLFSRFQIEHQIESAYSRQVGLPSGGAVVIDHTEALVSI
DVNSGRATKGADIEETAFRTNLEAADEIARQLRLRDLGGLIVIDFIDMESQKNQREVENR
LRDALRHDRARVQTGKISRFGLLELSRQRLRPALAETSYIPCPRCNGTGHIRSTESSALH
IVRILEEEAMKENTGAVHLQVPVDVATFLLNEKRVDIARIEMRHKVQLIIVPNRHLETPQ
HEIIRLRHDQLNLEDIALASYQMVQKPADEEPRLPTKDGEKPARQEAAVKGIAPEQPAPI
VEHRAEAAAPAATTAPRRGLIETILSWFRSEPAAAPETPATPETPTRREGRGRSERSTDN
RRGNGNRNRREGQRGERPDRGEREESAAQRTEGGRTGRSERGERAEGVEREKPQRQSQER
TERGERTERGEGGRNRGRGQRGAGRGEEAAEKPADKVIEAVSDVAVAAVPAELIVSAAET
VTAPSTQDEASLDSGTPEKRRRRGRGRRDRRGPDAAGEQVTEAGAVAEPSSAEVVAEVVD
EVVASPAAPAVEAVAVAEAPAEPAVEPTEPLHEQVVLAEPAAVTEEVAAELPVPATSVTT
VETVVEAAPLPVSVSTQQDLPSAAEPAASEVVVVAVAAEEAVASSAPVEAPAIEAQPATS
AEPVAVEVASAEAAVAETIVAEPAPVAVVGTETQAMEVETTTTRPAAPQPPATSTPIDLG
PALADSGLVLIETNRDKLASFGTGAPEQPQHIGRKPRPVAVVASEPLQQVETRK
NT seq
3045 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcatgcttttcaacgcgacgcaggccgaagaactgcgcgtcgcaatcgtagac
ggtcagaaactgatcgatctcgatatcgaatcggccgcaaaagaacaacgcaagagcaac
atctacaaggcggtcatcacccgaatcgagcccagcctcgaagccgctttcgtggattac
ggcgccgagcgccacggtttccttcccttcaaggaaatctcccgctcctatttccagccc
ggcgtagacgccggcaaggcgagcatcaaggaagccttgcgcgagggccaggaactcatc
gtccaggtcgagaaggacgagcgcggcaacaagggtgcggcgctcaccacctacatctcg
ctggccggccgctatctggtgctgatgcccaacaacccccgtggcggtggcgtgtcgcgc
cgcgtcgagggtgacgagcgcgccgaactgcgcgacgtcatggaccagctcgaagtaccg
ggaggcatgagcctgatcgcgcgtaccgccgccatcggccgcaacgccgaagagctgcag
tgggatctcaactacctgctgcagttgtggaccgcgatcgagggcgctgccaccagccag
tcgggcgctttcctgatctatcaggaaggcagcctggtcatccgtgccatccgcgactat
ttccagccggaaatcggcgagatcctgatcgacaccgacgacatctatgagcaggcgcgc
cagttcatggcccacgtcatgccgggcaacgtcaaccgggtcaagcgttaccaggacgac
gtgccgctgttctcgcgcttccagatcgagcaccagatcgaatcggcctactcgcgccag
gtcggcctgccctcgggcggcgccgtggtcatcgaccacaccgaagcgctggtgtcgatc
gacgtgaactccggccgcgccaccaagggcgccgacatcgaggaaaccgccttccgcacc
aacctcgaagcggccgacgaaatcgcccgccagctgcgcctgcgcgacctcggcggcctg
atcgtcatcgacttcatcgacatggagtcgcaaaagaaccagcgcgaagtcgagaaccgc
ctgcgcgacgcgctgcgccacgaccgcgctcgcgtgcagaccggcaagatcagccgcttc
ggcctgctcgaactgtcgcgccagcgcctgcgtccggcgcttgccgagaccagctacatc
ccctgcccgcgctgcaacggcaccggccacatccgcagcaccgaatcctcggcgctgcac
atcgtgcgcatcctcgaagaagaggcgatgaaggaaaacaccggcgcggtgcacctgcag
gtgccggtcgatgtcgccactttcctgctcaacgagaagcgggtcgacatcgcgcgcatc
gagatgcgccacaaggtgcagctgatcatcgtccccaaccgccatctggagacgccgcag
cacgagatcatccgcctgcgtcacgaccagctcaacctcgaggacatcgcgctggccagc
taccagatggtgcaaaagcccgccgacgaggaaccgcgcctgccgaccaaggatggcgaa
aagccggcccgccaggaagccgccgtcaagggcatcgcgcccgagcagccagcccccatc
gtcgagcatcgtgccgaagcggctgcgcccgccgccacaactgctccgcgtcgcggcctg
atcgagaccattctcagctggttccgcagcgaacccgccgccgcaccggagaccccggct
acgccggaaacacccacacgccgtgaaggccgcggccgcagcgaacgcagcaccgacaac
cgtcgtggcaacggcaaccgcaaccgccgcgaaggccaacgcggcgaacggccggatcgt
ggcgaacgtgaagagagcgcagcgcagcgcaccgaaggcggtcgcaccggccgcagtgaa
cgtggcgaacgcgccgagggcgtcgagcgtgagaagccccagcgccagtctcaggagcgt
acagaacgcggcgagcgtacagaacgcggcgaaggcggtcgcaatcgcggccgcggccag
cggggcgccggacgcggcgaagaagctgccgagaagccggccgacaaggtcatcgaagca
gtgtccgatgtggctgtcgccgccgtgccggcagagctgatcgtgtccgctgccgaaacc
gtgacggctccgtccacgcaagatgaggcatcgctcgacagcggaaccccggagaaacgc
cgtcgccgcggccgtggccgccgcgaccgccgcggtccggacgccgccggcgagcaagtg
accgaagccggcgcagtcgccgagccgtcgtccgccgaagttgtcgccgaggtcgtcgac
gaagttgtggcatcgccggccgctcccgcggtcgaggctgtcgccgtcgcggaagcgccc
gcggagccggctgtcgaaccgaccgagccgctccacgagcaggttgtgctggccgaaccg
gcagcggtcactgaggaagttgccgccgaactgcctgtccccgcgacctccgtcacgacg
gtcgagaccgtggtcgaagcggcaccgttgccggtcagtgtcagcacgcagcaagacctg
ccgtcggctgccgagcctgccgcatcggaggtcgtcgtggtggctgttgccgccgaggaa
gcggtcgcatcgagtgcgcctgtagaagctcctgcaatcgaagctcagccggccacctcg
gccgaaccggtcgcagttgaagtcgccagcgctgaggccgccgtggcagagactatcgtt
gccgaaccggcaccagttgcggtggtcgggacggaaacccaggccatggaagtcgaaacg
accactacccgtcccgctgcgccgcagccaccggccaccagcacgccgatcgatctcggc
cccgcactggctgacagcggcctggtactgatcgagaccaaccgcgacaagctggccagc
ttcggcaccggcgcgcccgagcagccccagcatatcggccgcaagccgcgcccggtggcc
gtagtcgccagcgaaccgctgcagcaggtcgaaacccgtaagtaa
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