Azoarcus sp. DD4: CJ010_11730
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Entry
CJ010_11730 CDS
T06048
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
azr
Azoarcus sp. DD4
Pathway
azr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
azr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CJ010_11730 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
azr03400
]
CJ010_11730 (mfd)
Enzymes [BR:
azr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CJ010_11730 (mfd)
DNA repair and recombination proteins [BR:
azr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CJ010_11730 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
AAA_30
CTE_SPB4
Glyco_tran_WecG
AAA_16
DUF3638
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QDF97147
UniProt:
A0A4Y6KSA4
LinkDB
All DBs
Position
complement(2541143..2544610)
Genome browser
AA seq
1155 aa
AA seq
DB search
MRKPRRPARCPVHSTLSLPALAGLALPKAGARLDLPGLAGSADAFAIAQLAGRGRMLAVV
TANPLDAQRLQDELAWIVPGLRTHLLPDWETLPYDSFSPHQDLISERLSTLYAVSRGEVD
VMLVPASTALYRLAPPTYLAAYTFFMKQGDKLDVDALRSQMAVAGYAHVTQVVSPGEFSV
RGGLVDLYPMGSTLPFRIDLFDDEVESIKTFDPDTQRTVYPTKEIRLLPAREFPLDDKGR
TRFRSRFRETFEGDPTRAAIYKDVSNGIAPAGIEYYLPLFFDETATLFDYLPVDVPVLLH
RDVPGAIGEFWRDTRSRYDLLKGDRSRPVVAPEQLFLGEEAFFLALKDRPRFAIGGDSRL
ADAAVALPELAVERKATDPLHKLKAFQAGFDGRILLLADSPGRRETMAEYLAEYGLKPDA
TADLAGFLESGSRFALGVAPLAAGFLLPEAQLAIVTETELYATSARARVRREAKKAATME
GWLRDLSELKIGDPVVHVSHGIGRYLGLVHMNLGEGDTEFLHLEYNGGDKLYVPVSQLHV
ITRYAGADPEAVDLHRLGSGQWEKAKKKAAMQVRDTAAELLALYAQRAARPGHRFDFKQH
DLEAFAEAFGFETTPDQQAAIDAVVGDMKSGRPMDRLVCGDVGFGKTEVALRAAFIAVAD
GKQVVVLCPTTLLAEQHYQTFADRFADWPIKIAELSRFKSTKEQAEALKQLGEGKVDIII
GTHRLLQKDVLFKRLGLVIIDEEHRFGVRQKEALKQLRSEVDILTLTATPIPRTLGLAME
GLREFSVIATAPQKRLAIKTFVQRWSKGIVREAVLREFKRGGQVYFLHNEVDTIENVRNE
LAELLPEARIVVGHGQLPERELERVMRDFTQQRANLLLCTTIIETGINIPTANTIVINRA
DRFGLAQLHQLRGRVGRSHHQAYAYLLTDAHAKPTAQAQKRLEAISMMEELGSGFYLAMH
DLEIRGAGEVLGENQSGEIQQVGFSLYTEMLKRAVKDLQAGKEPDLSQPLEVVSEINLHT
PALLPTDYCPDVQERLTLYKRLANCEDDDDLRALQEELIDRFGELPPQTVALVETHRLRM
LVKRWGVQKLDASEAQISVQFGKDAPIDPVKVIFLIQKDKTTKMAGPDKLVRRANLPDLK
QRVKAVKDLLEAVKA
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atgcgcaagccgcgccgcccagcccgatgtcccgtccactcgactctctctctgcctgcc
ctcgccggcctcgccctgccgaaagccggcgcacgtctcgacctgcccggcctcgccggc
tcggccgacgccttcgccatcgcccagctcgccggccgcggccgcatgctcgcggtcgtc
accgccaacccgctcgacgcccagcgcctgcaggacgaactcgcctggatcgtacccggt
ctgcgcacccatctgctgccggactgggaaaccctgccctacgacagcttctcgccccac
caggacctgatctccgagcggctatccaccctctacgcggtcagccgcggcgaggtcgac
gtgatgctggtgccggcctccaccgcgctctaccggctggcgccgccgacctatctcgcc
gcctacaccttcttcatgaagcagggcgacaagctggatgtggatgcactgcgcagccag
atggcggtggccggctacgcgcatgtgacgcaggtggtgagcccgggcgaattctcggtg
cgcggcggcctggtcgacctctacccgatgggctcgaccctgcccttccgcatcgaccta
ttcgacgacgaggtcgagagcatcaagaccttcgacccggacacccagcgcaccgtctac
cccaccaaggaaatccgcctgctgcccgcgcgcgagttcccgctcgacgacaaaggccgc
acccgctttcgcagccgcttccgcgaaaccttcgagggcgatcctacgcgcgcggcgatc
tacaaggatgtctccaacggcatcgcgccggccggcatcgagtactacctgccgctgttc
ttcgacgagaccgccacgctgttcgactatctgccggtcgacgtgccggtgctgctgcac
cgcgacgtaccgggcgcgatcggcgagttctggcgcgacacccgctcgcgctacgacctg
ctgaagggcgaccgcagccggccggtggtggcgccggagcagctcttcctcggcgaggaa
gccttcttcctcgcgctcaaggacaggccgcgtttcgccatcggcggcgacagccggctg
gcggacgccgccgtcgcgctgcccgaactggcggtggaacgcaaggccaccgacccgctg
cacaagctgaaggccttccaggccggtttcgacggccgcatcctgctgctcgccgattcg
cccggccgccgcgagaccatggcggaatacctcgccgagtatggtctcaagcccgacgcg
actgccgacctcgccggcttcctcgaatccggcagccgtttcgcgctcggcgtcgcccca
ctcgctgccggcttcctgctgccggaagcgcagctcgccatcgtcaccgaaaccgagctc
tacgccaccagcgcccgcgcccgcgtgcgccgcgaggcaaagaaggcggcgacgatggag
ggctggctgcgcgatctctccgagctcaagatcggcgacccggtggtgcatgtgtcgcac
ggcatcggccgctacctcggccttgtccacatgaacctcggcgagggcgacaccgagttc
ctgcacctggaatataacggcggcgacaagctctacgtgccggtgtcgcaactgcatgtg
atcacccgctacgccggcgccgacccggaagcggtggacctgcaccgcctcgggtccggc
cagtgggaaaaggccaagaagaaagcggcgatgcaggtgcgcgacaccgccgccgagctg
ctggcgctctacgcccagcgcgccgcccgccccggccaccgcttcgacttcaagcagcac
gacctcgaagccttcgccgaggccttcggcttcgagaccacgcccgaccagcaggccgcg
atcgacgcggtggtcggcgacatgaaatccggccggccgatggaccgcctggtgtgcggc
gacgtcggcttcggcaagaccgaagtcgcgctgcgcgccgccttcatcgcggtggccgac
ggcaagcaggtggtggtgctgtgcccgaccacgctgctggccgaacagcactaccagacc
ttcgccgaccgcttcgccgactggccgatcaagatcgccgagctatcgcgcttcaagtcc
accaaggaacaggccgaggcgctcaagcagttgggcgagggcaaggtcgacatcatcatc
ggtacccaccgcctgctgcagaaggacgtgctgttcaagcggctcgggctggtcatcatc
gacgaggaacaccgtttcggcgtgcgccagaaggaggccttgaagcagctgcgcagcgag
gtcgacatcctgacgctgaccgccacgcccatcccgcgcacgctggggctggcgatggag
gggctgcgcgagttctcggtgatcgccaccgcgccgcagaagcgcctcgcgatcaagacc
ttcgtgcagcgctggagcaagggcatcgtgcgcgaggcggtgctgcgcgaattcaagcgc
ggcggccaggtgtatttcctgcacaacgaggtcgacaccatcgagaacgtgcgcaacgag
ctggccgaactgctgccggaagcgcgcatcgtcgtcggccacggccagctgccggagcgc
gagctcgaacgcgtgatgcgcgacttcacccagcagcgcgccaacctgctgctgtgcacc
accatcatcgaaaccggcataaacatccccaccgccaacaccatcgtcatcaaccgcgcc
gaccgcttcgggctggcccagttgcaccagctgcgcggccgcgtcggccgttcgcaccac
caggcctacgcctacctgctgacggacgcccacgccaagcccacggcgcaggcgcagaag
cggctggaagcgatctcgatgatggaagagctgggctccggcttctacctggcgatgcac
gacctggagatccgcggcgccggcgaggtactgggcgagaaccagtcgggcgagatccag
caggtcggcttctcgctctacaccgagatgctcaagcgtgcggtgaaggatctgcaggcc
ggcaaggagccggacctgtcgcagccgctggaggtggtgtccgagatcaacctgcacacc
ccggcgctgctgcccaccgactactgccccgacgtgcaggaacgtctgaccctctacaaa
cgcctggccaactgcgaggacgacgacgatctgcgcgcgctgcaggaagagctgatcgac
cgcttcggcgaactgccgccgcagaccgtggccttggtcgaaacccaccgcctgcgcatg
ctggtcaagcgctggggagtgcagaagctcgacgcctccgaggcgcagatcagcgtgcag
ttcggcaaggacgcgccgatcgacccggtgaaggtcatcttcctgatccagaaggacaag
accaccaagatggccgggccggacaagctcgtccgccgtgcgaatctgcccgacctcaag
cagcgggtgaaggcggtgaaggatctgctcgaggccgtcaaggcctga
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