Azoarcus sp. DD4: CJ010_13520
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Entry
CJ010_13520 CDS
T06048
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
azr
Azoarcus sp. DD4
Pathway
azr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
azr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CJ010_13520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
azr03019
]
CJ010_13520
03009 Ribosome biogenesis [BR:
azr03009
]
CJ010_13520
Enzymes [BR:
azr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CJ010_13520
Messenger RNA biogenesis [BR:
azr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CJ010_13520
Ribosome biogenesis [BR:
azr03009
]
Prokaryotic type
rRNA helicases
CJ010_13520
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
T7SS_ESX_EspC
UvrA_inter
HEM4
AAA_19
AAA_22
Flavi_DEAD
CpgS_C
Motif
Other DBs
NCBI-ProteinID:
QDF97478
LinkDB
All DBs
Position
2942704..2944650
Genome browser
AA seq
648 aa
AA seq
DB search
MTDPIATFADLNLPPALLQALADVGYETPSPIQAACIPQLLDGHDILGEAQTGTGKTAAF
ALPMLARLDLAKRNPQVLVLTPTRELAIQVAEAFQKYAHHLRDFHVLPLYGGQSMVVQLR
QLSRGAQVIVGTPGRVMDHLERGSLKLDGLSALVLDEADEMLRMGFIEDVEWILEHTPPE
RQTALFSATMPDAIRRVAHQHLREPKEVKIRAATSTVSAISQRYWLVRGVDKLDALTRIL
DAEEKLDAAIVFVRTKTATTELADKLEARGYAAAALNGDMTQGLRERVIEQLKNGSLDIV
VATDVAARGIDVPRISHVINYDIPYDTEAYVHRIGRTGRAGREGSAILFVAPRESRMLKA
IERATRQPIEAIALPSREAVAGRRVAQFKQLVLDTLQQEDLGFFMDVVNGLAEEHELDAH
EIAAALTYLAQRDKPLQVEESGRGWDVATAPTERERRPARETQRDNTWSERPERAPRPNR
DEILNRRRAFADGALVRYRIDVGRSQGATPKEIVGAIANEGGIEGKYIGQIHLFDDYSTV
ELPASLPGELLGLLKRTRVRQCSLNIRPLTEAEANAQPPRRGPQRDSQRPEAGRRHPTEE
RKEWGQKRTTPSQPQERSEQGAKPARFGTGKPHPDKGSDKPWKRKEKR
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatccgatcgccacctttgccgacctcaacctgccccctgcactgctgcaggcg
cttgccgacgtcggctacgaaaccccttcgcccatccaggccgcgtgtattccacagctg
cttgacggtcacgacatccttggtgaagcgcagaccggcaccggcaagactgcggcgttc
gccttgcccatgctggctcgcctggacctcgccaaacgcaatccgcaggtgctggtgctg
acgccaacccgcgaactcgcgatccaggttgcagaggccttccagaagtacgctcatcat
ctgcgcgactttcatgtgctgccgctctacggcggccagagcatggtggtgcagctgcgc
cagctgtcacgcggtgcccaggtcatcgtcggcacccctggccgggtcatggaccacctg
gagcgcggcagtctcaagctggacggactgtccgccctggtgctggacgaggccgacgag
atgctgcgcatgggcttcatcgaagacgtcgaatggatcctcgagcacacgccgccggag
cgccagaccgcgctgttttccgcaaccatgccggatgcgatccgacgcgtggcgcaccag
cacctgcgcgaacctaaggaagtgaagatccgggccgcgaccagcacggtgtcggcgatc
agccagcgctactggctggtgcgcggcgtcgacaagctcgacgccctcacgcgcatcctc
gacgccgaggaaaagctcgatgcggccatcgtcttcgtacgcaccaagacggcaacgacc
gagctcgcggacaagctcgaagcccgcggctacgccgcggccgcactcaacggcgacatg
acccagggcctgcgcgagcgtgttatcgagcagctgaagaacggctcgctggacatcgtc
gtcgccaccgacgtcgcagcgcgcggcatcgacgtaccgcgcatcagtcacgtcatcaac
tacgacatcccctacgacaccgaagcctacgtacaccgtatcggccgcaccggacgcgcc
ggccgcgaaggtagcgccatcctcttcgtcgcgccgcgcgagagccgtatgctgaaggcg
atcgaacgcgctacgcgccagcccatcgaagctatcgcgctgcccagccgcgaagctgtc
gccggccggcgggtcgcccagttcaagcagttggtgctcgacaccctgcaacaggaagac
ctgggcttcttcatggacgtggtgaacggactggcggaggagcatgaactcgacgcacac
gaaatcgccgcggcgctgacctatctcgcccagcgcgacaaacctctgcaagtcgaagaa
agcggccgtggctgggacgtggcaacggcaccgacggagcgcgaacgtcgccccgcccgc
gaaacgcaacgggacaacacctggagcgagcgtcccgaacgtgcaccgcgccccaaccgt
gacgagatcctcaaccgtcggcgtgccttcgccgacggcgccctggtgcgctaccgcata
gacgtgggtcgcagccagggtgccacgcccaaggaaatcgttggtgcaatcgcaaacgaa
ggcggcatcgagggcaagtacatcggacagatccacctgttcgacgactacagcacggtc
gaactgcctgccagcctgccaggcgaactcctcggtctgctcaagcgcacccgcgtgcgc
cagtgctcactcaacatccgccccctgactgaagccgaggcaaacgcgcaaccaccgcgc
cgcggtccgcaacgtgacagccagcgtcccgaggccggcaggcgccaccccaccgaagaa
cgcaaggaatgggggcaaaagcgcacgacacccagccagccccaggagcgtagcgagcaa
ggcgccaagccggcacgtttcggcacgggcaagcctcatcccgacaaaggttcagacaag
ccttggaagcgcaaggaaaaacgctga
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