Azoarcus sp. DD4: CJ010_20670
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Entry
CJ010_20670 CDS
T06048
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
azr
Azoarcus sp. DD4
Pathway
azr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
azr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CJ010_20670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
azr03400
]
CJ010_20670
DNA repair and recombination proteins [BR:
azr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CJ010_20670
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CJ010_20670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_DNA-bind
UvrA_inter
ABC_tran
SMC_N
AAA_16
AAA_29
nSTAND1
AAA_23
DnaJ_CXXCXGXG
RsgA_GTPase
AAA_22
AAA_21
BCA_ABC_TP_C
AAA_18
nSTAND3
Viral_helicase1
cobW
AAA_25
NACHT
T2SSE
DUF3987
Motif
Other DBs
NCBI-ProteinID:
QDF98777
UniProt:
A0A4Y6KX14
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All DBs
Position
4485404..4488229
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AA seq
941 aa
AA seq
DB search
MDEIRIRGARTHNLKNISLDLPRNRLTVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
ARQFLQLMEKPDVDLIEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLYARAGTPHC
PDHPAHALEAQSVSQMVDHVLALPEETRLMILAPVVSGRKGEQQDLFADLRAQGFVRVRV
DGVVMELDAMAPLEKGRRHDVQVVIDRLKVRADLRGRLAESFETALTHADGRAIAVEMDG
GTEHLFSARFACPVCSFALAELEPRLFSFNNPAGACPKCDGLGKIDFFDPERVVAHPHLS
LAAGAIRGWDRRNQFYFQMLASLADHYGFDLESAFEQLPEAVRATVLHGSGREKIAFRYL
ADNGRTVLKEHPFEGIIPNLERRYKETDSLAVREELSKYRATRACPACEGSRLRSEARHV
LIGDRNLTDISRLPLGACRSFFENLQLSGQRAQIADKIVKEIADRLSFLINVGLDYLSLD
RSADTLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRLLATLCKLRDLGNTV
IVVEHDEDAIRAADYLVDMGPGAGEHGGHVIACGTPAEVFADEASITGAYLAGRKQIAIP
AERIAPSPERLLRLRGARGNNLRNVTLELPVGLFICVTGVSGSGKSTLINETLAPIAARQ
LHGAAAEPAPYDSIEGLDAFDKVINVDQSPIGRTPRSNPATYTGLLTPIRELFAGVPEAR
ARGYGPGRFSFNVKGGRCEACQGDGLIKVEMHFLPDMYVPCDICHGRRYNRETLEIRYKG
RSIYEVLEMTVEQAFDFFRPVPAIARKLETLIDVGLGYIRLGQSATTLSGGEAQRVKLAL
ELSKRDTGRTLYILDEPTTGLHFQDIELLLTVLHRLREHGNTVVVIEHNLDVIKTADWIV
DLGPEGGGGGGTVVCAGTPEAIAAHPGSHTGRYLGAMLGVR
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atggacgaaatccgcattcgcggcgcgcgcacccacaatctgaagaacatcagcctggat
ctgccgcgcaaccggctgaccgtcatcaccggtttgtcaggctcgggcaaatcctcgctg
gccttcgacacgctgtacgccgagggacagcgacgctacgtcgaatccttgtcggcctac
gcccggcagttcctgcaactgatggaaaagcccgacgtcgatctgatcgagggactgtcg
cctgcaatctcgatagagcagaaggcgaccagccacaatccgcgctccaccgtcggcacc
gtcaccgaaatccacgattacctgcgcctgctgtatgcgcgcgccggcacaccgcattgc
cccgatcatccggcccacgccctggaagcccagagcgtgtcacagatggtggaccatgtg
ctcgcactgcccgaagagacgcggctgatgatcctcgccccggtggtgagcggccgcaag
ggcgagcagcaggatctctttgcggacttgcgggcacagggctttgtccgcgtgcgggta
gacggtgtcgtcatggaactggacgcgatggcgccgctcgagaaggggcgtcgtcacgac
gtgcaggtggtgatagaccggctgaaggtacgcgccgacctgcgcggcagactggccgaa
tccttcgagaccgcgctgacccatgccgacggtcgcgctatcgcggtcgagatggacggc
ggtaccgagcacctcttttccgcccgcttcgcctgcccggtatgcagcttcgcgctcgca
gaactggaaccgcgactgttctccttcaacaaccccgccggggcgtgccccaagtgcgac
ggactcggcaagatcgacttcttcgacccggaaagggtggtcgcacacccgcatctgtca
ctcgcggccggcgcaatccgtggctgggatcgtcgcaaccagttctatttccagatgctg
gccagcctcgccgatcattatggtttcgacttggagtccgctttcgagcagctgcctgaa
gcggtccgcgcgacggtgctgcacggctccggacgagagaagatcgcattccgctatctg
gcggacaacggcaggacggtacttaaagagcatcccttcgaaggcatcattcccaacctc
gagcggcgctacaaggagaccgactcgctggcagtacgcgaagagctcagcaagtaccgc
gcaacccgtgcctgccccgcctgcgagggcagccgcctgcgcagcgaagcgcgccacgtg
ctgatcggcgaccgcaacctgaccgacatcagtcgcttgccgctgggcgcatgcagatcc
ttctttgaaaacctgcagctcagcggccagcgcgcccagattgccgacaagatcgtcaag
gagatcgccgaccgcctgagcttcctcatcaacgtcgggctcgactacctctcgctcgac
cgttcggccgacaccctgtccggcggcgaagcccagcgcatccgcctggccagccagatc
ggctccgggctcaccggcgtcatgtacgtcctcgacgaaccgtcgatcggcctccatcag
cgcgacaacgaccgactgctcgccaccctgtgcaagctgcgggatcttggcaataccgtc
atcgtggtcgagcacgacgaggacgccatccgtgctgccgactatctggtggacatgggg
ccgggcgccggcgagcacggcgggcatgtcatcgcctgcggtactccggccgaggtattt
gccgacgaagcttccattaccggcgcctatctcgccggacggaagcagatcgcgatccct
gcggagcgcattgcgccctctccggaacgcctgctacggctccgaggcgcgcgcggcaac
aacttgcgcaacgtcacgctggagttgccggtcggactgttcatctgcgttaccggcgtt
tccgggtcaggcaagtctacgctcatcaacgagaccctcgcgccgatcgcagcacgccaa
ctgcatggcgccgccgccgagcctgcgccttacgacagcatcgaggggctggacgccttc
gacaaggtcatcaacgtcgaccagtccccgatcggccgcacgccccgctccaatccagca
acctacaccggcctgctcacccccatccgggagctcttcgccggcgtgcccgaggcgcgg
gcgcggggttacggccccggccgcttctccttcaacgtcaagggcggccgctgcgaagcc
tgccagggcgatggcctgatcaaggtcgagatgcatttcctgccggacatgtacgtcccc
tgcgacatctgccacggccgcagatataaccgagaaacgctggagatccgctacaagggc
cgcagcatctacgaggtgctggaaatgacggtcgagcaggccttcgacttcttccggccg
gtgccggcgattgcccgcaagctcgaaaccctgatcgacgtcggcctcggctacatccgg
ctaggccagagcgcgacaacgttgtccggcggggaagcccagcgtgtcaagctggcactc
gaactgtcaaagcgcgataccgggcgcacgctctatatcctcgacgaaccgaccaccggc
ctgcatttccaggatatcgaactgttgcttaccgtgcttcatcgcctgcgggagcacggc
aataccgtggtcgtcatcgagcacaatctggacgtgatcaagacggccgactggatcgtc
gacctcgggccggagggcggtggtggtggcggtacggtggtgtgtgccggcactccggaa
gcgatagccgcccatcccggcagccataccggacgatacctcggtgcgatgctcggcgta
cgctga
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