Azoarcus sp. DD4: CJ010_20850
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Entry
CJ010_20850 CDS
T06048
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
azr
Azoarcus sp. DD4
Pathway
azr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
azr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CJ010_20850 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
azr03021
]
CJ010_20850 (rpoC)
03400 DNA repair and recombination proteins [BR:
azr03400
]
CJ010_20850 (rpoC)
Enzymes [BR:
azr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CJ010_20850 (rpoC)
Transcription machinery [BR:
azr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CJ010_20850 (rpoC)
DNA repair and recombination proteins [BR:
azr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CJ010_20850 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Biotin_lipoyl_2
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
QDF98813
LinkDB
All DBs
Position
complement(4508222..4512436)
Genome browser
AA seq
1404 aa
AA seq
DB search
MKSLLADLFKQTLPNEEEFDAITIGLASPDKIRSWSYGEVKKPETINYRTFKPERDGLFC
AKIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLSKVRRERMGHIELASPVAHIWFLK
SLPSRLGMVLDMTLRDIERVLYFEAFVVVEPGMTPLNRAQLLTEDDYLAKVEEYGDDFDA
VMGAEGIRELLRTLDVNQEIEKLRSDLETTGSEAKIKKFSKRLKVLEAFQQSGIKPEWMI
LEVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPDIIVRNEKRM
LQESVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVITVG
PQLKLHQCGLPKLMALELFKPFIFNKLELMGLATTIKQAKKMVESQEPVVWDILEDVIRE
HPVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCVAFNADFDGDQMAVHVPLSLEAQM
EARTLMLASNNVLSPANGEPIIVPSQDIVLGLYYASREGVNVPGEGMLFTDVGEVKRAYE
SGQISLHARVTVRLKEADLGPNGERIERVSRYNTTAGRAILSEILPAGLPFSVIDKPLKK
KEISKLINASFRRCGLRATVIFADQLMQYGYRLATRAGISIAVKDMLVPDLKEDLIRAAE
AEVKEIAQQYTSGLVTDGERYNKVVDIWGRCGDQVAKAMMEQLGQEPVVDRNGNTVKQEA
FNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITTNFREGLNVLQYFISTHG
ARKGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTREGFNMKALIEGGEVVEPLRER
ILGRVCAEDVVNPDTQETAIEAGTLLDEDAVDLIESLGVDEVKVRTPLTCETRYGLCAKC
YGRDLGRGSMVNSGEAVGVIAAQSIGEPGTQLTMRTFHVGGAASRAAAASGVEAKSTGTI
RFAGNMRYVANAKGEKVVIARSAEVVVADDMGRERERHKLPYGAMLQVDDGAQVKAGAQL
ATWDPHTRPIVTEYSGTVKFENVEEGVTVAKQIDEVTGLSTLVVIDSKRRSSTGAAKGVR
PQVKLLDENDEEVRIAGTDHAVAITFQVGSLITVKDGQQVSVGDILARIPQESAKTRDIT
GGLPRVAELFEARSPKDAGLLAEYTGTVSFGKDTKGKQRLVITEPDGTVHEFLIPKDKHL
MVHDGQVVNKGELIVDGPADPHDILRLQGINELARYIIDEVQDVYRLQGVKINDKHIEVI
VRQMLRRVVITDPGDTKFIREEQVERSEVLDENDRIEAEGKLPAQYENVLLGITKASLST
DSFISAASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGLAYHRSRRSQSAGD
DLGAEHAWAPVDAVVEEQQDIQAS
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atgaagagcctgctcgctgacctgttcaagcaaaccctgccgaacgaggaagaattcgac
gcgatcaccatcggtctcgcgtcgccggacaagatccggtcgtggtcctacggtgaggtg
aagaagcccgagaccatcaactaccgcaccttcaagccggagcgcgacggcctgttctgc
gccaagatcttcgggccggtgaaggattacgagtgcctgtgcggcaagtacaagcgcctc
aagcaccgcggcgtgatctgcgagaagtgcggcgtcgaagtgaccctgtccaaggtgcgc
cgcgagcgcatgggccacatcgaactcgccagcccggtggcccacatctggttcctgaag
agcctgccgagccgcctgggcatggtgctcgacatgaccctgcgcgacatcgagcgcgtg
ctctacttcgaagccttcgtcgtagttgagccgggcatgaccccgctcaaccgcgcccag
ctgctgaccgaagacgactatctcgcgaaggtggaggagtacggtgacgacttcgacgcc
gtgatgggtgccgagggcatccgcgaactgctgcgcacgctggacgtcaatcaggaaatc
gagaagctgcgctcggatctggaaaccaccggctccgaagccaagatcaagaagttctcc
aagcgcctcaaggtgctggaggcgttccagcagtccggcatcaagccggaatggatgatt
ctggaagtgctgcccgtgctgccgccggacctgcgtccgctggtgccgctggacggcggc
cgcttcgcgacttccgatctgaacgacctctaccgtcgcgtcatcaaccggaacaaccgc
ctcaagcgtctgctcgaactgaaggcgccggatatcatcgtccgtaacgaaaagcgcatg
ctgcaggagtcggtggactcgctgctcgacaacggtcgtcgtggcaaggcgatgaccggc
gccaacaagcgtccgctgaagtcgctggccgacatgatcaagggcaagggcggccgtttc
cgtcagaacctgctgggcaagcgcgtcgactactcgggccgctccgtcattaccgtgggt
ccccagctcaagttgcaccagtgtggcctgcccaagctgatggcgctcgaactgttcaag
cccttcatcttcaacaagcttgagctgatggggctggctacgaccatcaagcaggccaag
aagatggtggagtcgcaggaaccggtggtatgggacatcctcgaagatgtcatccgcgag
catccggtgatgctgaaccgcgcaccgaccctgcaccgtctcggcatccaggctttcgaa
ccggtgctgatcgagggcaaggcaatccaactccacccgctggtctgcgtggccttcaac
gccgacttcgacggcgaccagatggcagtacacgtcccgctgtcgctcgaagcgcagatg
gaggcccgcaccctgatgctggcctccaacaacgtactgtcgcccgccaacggcgagccg
atcatcgttccgtcgcaggacatcgtgctgggcctctactacgccagccgcgagggtgtg
aacgtgccgggcgagggcatgctgtttaccgacgtgggcgaagtcaagcgcgcctacgaa
tcgggccagatctccttgcacgcccgtgtgacggtgcgcctgaaggaggccgacctcggt
cccaatggcgagcgcatcgagagggtgtcgcgctataacacgaccgccggccgcgccatc
ctgtccgagattctgcctgctggcctgcccttcagcgtgatcgacaagccgctgaagaag
aaggaaatctcgaagctgatcaacgcgtccttccgtcgctgcggtctgcgcgcgacggtg
attttcgccgaccagctgatgcagtacggctaccgcctggcgacccgtgccggtatctcg
atcgcggtcaaggacatgctcgttccggatctgaaggaagacctgatccgtgccgccgaa
gccgaagtcaaggagatcgcccagcagtacacctccggcctggtgaccgatggcgagcgc
tacaacaaggtcgtcgatatctgggggcgctgcggcgaccaggtggcgaaggcgatgatg
gagcagcttggccaggagcctgtggtcgaccgcaacggcaacaccgtcaagcaggaagcc
ttcaactccatctacatgatggccgactcgggcgcgcggggttccgccgcccagatccgc
cagctggccgggatgcgtggtctgatggcgaagccggacggctccatcatcgagacgccg
atcacgaccaacttccgtgaaggcttgaacgttctgcagtacttcatctcgacccacggt
gcgcgtaaaggtctggcggataccgcgctgaaaaccgcgaactccggctacctgacccgt
cgtctggtcgacgtgacgcaggacctggtcgtgatcgaggacgactgcggtacgcgagaa
ggcttcaacatgaaggccctgatcgagggtggcgaggtcgtcgagccgctgcgcgagcgt
atcctcggtcgcgtatgcgccgaagacgtcgtgaatcccgacacgcaggagacggcgatc
gaagccggtaccctgctggacgaagatgcggtggatctgattgaaagcctgggcgtggac
gaggtgaaggtgcgcacgccgctcacctgcgaaacacgttacggcctgtgcgccaagtgc
tatggccgtgaccttggtcgcggctccatggtcaactcgggcgaggcagtcggcgtgatt
gcagcccagtcgatcggcgagccgggcacccagctgacgatgcgtaccttccacgtcggt
ggcgcggcgtcgcgggcagcggcggccagcggtgtcgaggccaagtcgaccggtaccatc
cgcttcgccggcaacatgcgttacgttgccaacgccaagggcgagaaggtggtgatcgcg
cgttccgccgaagtggtggtggccgacgacatgggccgtgagcgcgaacgccacaagctg
ccttacggcgcgatgctgcaggtagatgacggtgctcaggtcaaggccggcgcccaactc
gcgacctgggacccgcatacccgtcccatcgtgaccgaatactccggcacggtgaagttc
gagaatgtcgaagaaggcgtgacggtcgccaagcagatcgacgaggtcaccggtctgtcg
acgctggtcgtgatcgattccaagcgccgctcctcgaccggtgcagcaaagggcgtgcgt
ccgcaggtgaaactgctcgatgagaacgacgaggaggtccgcatcgctggcaccgatcac
gccgtggccatcaccttccaggtcggttcgctgatcaccgtgaaggacggtcagcaggtc
agcgtcggtgacatccttgcacgtattccgcaggagtcagcgaagactcgcgacatcacc
gggggtctgccgcgcgtcgccgagttgttcgaagctcgttcgccgaaggatgccggcctg
ttggccgagtacaccggtacggtttcgttcggcaaggacaccaagggcaagcagcgtctg
gtgatcaccgagccggacggcacggtgcacgagttcctgatcccgaaggacaagcacctc
atggttcacgatggccaggtggtgaacaagggcgaactcatcgtcgatggtccggccgat
ccgcacgacatcctgcgcctgcagggtatcaacgaactcgcacgctacatcatcgacgaa
gtgcaggacgtctatcgtctgcagggcgtgaagatcaacgacaagcacatcgaagtgatc
gtgcgccagatgctgcggcgggtggtcattaccgatccgggcgataccaagttcatccgg
gaggagcaggtcgaacgctccgaagtgctggacgaaaacgatcgcatcgaggccgaaggc
aagctgccggcacagtacgaaaacgtgctgctcggcatcaccaaagcatcgctgtcgacc
gattcgttcatctcggcggcgtccttccaggaaaccacccgcgtgttgaccgaagcggcg
atcatgggcaagcgcgacgaactccgtggtctgaaggagaacgtcatcgttggccgcctg
atcccggcgggaacgggtctggcgtatcaccgcagtcgccggtcgcagtcggccggcgac
gatctcggcgcggagcatgcctgggctcccgtcgatgccgtagtcgaagagcagcaggac
atccaggcgagttga
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integrated database retrieval system
