Azospirillum sp. TSH100: E6C72_04270
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Entry
E6C72_04270 CDS
T09516
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
azs
Azospirillum sp. TSH100
Pathway
azs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
azs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E6C72_04270 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
azs03019
]
E6C72_04270 (pnp)
03016 Transfer RNA biogenesis [BR:
azs03016
]
E6C72_04270 (pnp)
Enzymes [BR:
azs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
E6C72_04270 (pnp)
Messenger RNA biogenesis [BR:
azs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
E6C72_04270 (pnp)
Transfer RNA biogenesis [BR:
azs03016
]
Prokaryotic type
tRNA degradation factors
E6C72_04270 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH-I_KHDC4-BBP
KH_2
OB_RRP5_4th
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
QCG87019
LinkDB
All DBs
Position
1:891521..893632
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AA seq
703 aa
AA seq
DB search
MFTVHRKEIEWGGRKLVLETGKIARQANGAVLVTYGDTTVLCTAVAAKAPKPGVDFFPLT
VNYQEKAFAAGKIPGGFFKREGRPTEKETLVSRLIDRPIRPLFADGFRNETQVVCTVLSH
DLENDPDIVAMVGASAALTISGIPFLGPIGAARVGYKNGQYILNPTMDEVDDSDLDLVVA
GTVEGVLMVESEAKELTEEVMLGAVMFGHTNFQPVINMIIDLAEECAKEPWDLPEPSYDR
KALKARLRETVGADVEAAYTETVKQSRYEKVGAAKAKALETLAEEFDAQSIGFEFKELEA
DILRGAVLKTGRRIDGRDTKTVRPIVSEVGVLPRAHGSALFTRGETQALVVTTLGTSQDE
QIIDALEGEYREHFMLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAIHPLLPKKEDFP
YTLRVVSEVTESNGSSSMATVCGTSLSLMDAGAPLARPVAGIAMGLIKEDHGFAVLSDIL
GDEDHLGDMDFKVAGTEVGVTALQMDIKITSITEEIMKIALGQAKDGRLHILGEMSKALT
GAREGVNENAPRITVINIPKEKIRDVIGSGGKVIREIVEQTGAKIDIDDDGTVKVSAVDQ
KKSDAAIEWIKGIVAEPEMNVVYTGKVVKVVDFGAFVNFLGSRDGLVHISELAQQRVGKV
SDVVSQGDQVKVKVIGFDDRGKVKLSMKQVDQATGEDLTKKAE
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgtttactgttcatcgcaaagaaatcgagtggggcggccgcaagctggtcctggagacg
ggcaagatcgcccgtcaggccaacggcgcggtgctggtcacctatggtgacaccaccgta
ctgtgcaccgccgtcgccgccaaggcgccgaagccgggcgtcgatttcttcccgctgacc
gtcaactatcaggaaaaggcattcgcagccggcaagatccccggcggcttcttcaagcgc
gaaggccgtccgaccgagaaggaaacgctggtcagccgcctgatcgaccgtccgatccgt
ccgctgttcgccgacggcttccgcaacgagacgcaggtcgtctgcaccgtgctgagccat
gatctggagaatgatccggacatcgtggcgatggtcggcgcctcggccgccctgaccatt
tccggcatcccgttcctgggtccgatcggcgccgcccgcgtcggctacaagaacggccag
tacatcctgaacccgaccatggacgaggtcgacgacagcgacctggatctggtcgtcgcc
ggcaccgtcgaaggcgttctgatggtcgagtcggaagccaaggagctgaccgaagaggtc
atgctgggcgccgtcatgttcggccacaccaacttccagccggtgatcaacatgatcatc
gatctggccgaggaatgcgccaaggagccttgggacctgccggagccgtcctacgaccgc
aaggccctgaaggcccgcctgcgcgagaccgtcggtgcggacgtcgaggccgcctacacc
gagacggtgaagcagagccgctacgagaaggtcggtgccgccaaggcgaaggccttggag
actctggccgaggaattcgacgcccagtcgatcggtttcgagttcaaggagttggaggcc
gacatcctgcgcggcgccgtcctgaagaccggccgccgcatcgacggccgcgacaccaag
accgtgcgcccgatcgtgtcggaagtcggcgttctgccgcgcgcacacggctcggccctg
ttcacccgcggcgagacccaggcactggtcgtcaccacgctgggcaccagccaggacgag
cagatcatcgacgcgctcgaaggcgaataccgcgagcacttcatgctgcactacaacttc
cccccgtattcggtgggtgaagccggccgcatgggcagcccgggccgccgcgagatcggc
catggcaagctggcgtggcgcgccatccacccgctgctgccgaagaaggaagacttcccc
tacacgctgcgcgtcgtgtcggaagtcacggagtccaacggctcctcctcgatggccacc
gtctgcggcacctcgctgtcgctgatggatgccggcgcgccgctggcccgcccggtcgcc
ggcatcgccatgggcctgatcaaggaagaccacggcttcgccgtcctgtcggacatcctg
ggtgacgaagatcacctcggcgacatggacttcaaggtcgccggcaccgaggtcggcgtc
accgcgctgcagatggacatcaagatcacctcgatcaccgaggagatcatgaagatcgcg
ctgggccaggccaaggacggccgcctgcacatcctgggcgagatgtcgaaggcgctgacc
ggcgcccgcgaaggcgtcaacgagaacgccccgcgcatcaccgtgatcaacatcccgaag
gagaagatccgcgacgtgatcggctccggcggcaaggtgatccgcgagatcgtcgagcag
accggcgccaagatcgacatcgacgacgatggcaccgtcaaggtctcggccgtcgatcag
aagaagtcggacgccgccatcgagtggatcaagggcatcgtcgccgagccggagatgaac
gtcgtctacaccggcaaggttgtgaaggtcgtcgatttcggcgccttcgtgaacttcctg
ggctcacgcgacggcctcgtccacatctccgaactggcacagcagcgcgtcggcaaggtg
tcggacgtcgtgtcgcagggtgaccaggtgaaggtcaaggtcatcggcttcgacgaccgc
ggcaaggtcaagctgtcgatgaagcaggtcgatcaggccaccggcgaggacctgaccaag
aaggcggagtga
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