Azospirillum sp. TSH100: E6C72_05885
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Entry
E6C72_05885 CDS
T09516
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
azs
Azospirillum sp. TSH100
Pathway
azs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
azs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E6C72_05885 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
azs03019
]
E6C72_05885 (recQ)
03400 DNA repair and recombination proteins [BR:
azs03400
]
E6C72_05885 (recQ)
Enzymes [BR:
azs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
E6C72_05885 (recQ)
Messenger RNA biogenesis [BR:
azs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
E6C72_05885 (recQ)
DNA repair and recombination proteins [BR:
azs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
E6C72_05885 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
RecQ_Zn_bind
Helicase_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
QCG87301
LinkDB
All DBs
Position
1:1240501..1242429
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AA seq
642 aa
AA seq
DB search
MDSLFSYSNLGASDDASGQRPATALDALRTVFGYDSFRGQQADIIDHVVRGGDALVLMPT
GGGKSLCYQIPALVRDGVTVVVSPLIALMRDQVTALRELGVRAAFLNSSLGPAEAREVER
AMVQGEIELVYVAPERLVTPRFLDLLDRTRLALFALDEAHCVSQWGHDFRPEYLQLSILH
ERHPMVPRIALTATADVQTRAEIKDKLGLSEARVFLSSFDRPNITYRVVPKKSERQQMLA
FLRENHPEDAGIVYCMSRNKVEEVAAWLNQQGREALPYHAGLPAETREANQDRFIKSEGL
VMVATVAFGMGIDKPNVRFVCHLDPPKSLEAYYQETGRAGRDGLPANAWMAYGMADVVML
RQMLEQSEAGDSHRRVERGKLEALLGFCETPDCRRQVLLNYFNETLPEPCGNCDTCLDPV
ETWDGTVAAQKALSAVYRTGQRYGAGHLIDVLVGNATEKVVQQNHDQLKTFGVGKDLTKV
EWQSVYRQLVATGLLTVDLEGYGGFRLTDAGVAVIKGQRVVKLRKDPVLERRRGVHDALR
RHTARGGSVGGGLSGEGVSRSGARGALSAADDALWHALKDCRTALAKAQSVPPYVIFHDS
TLLEMVAQRPRDHASFAHLPGVGGRKLERYADAFLEVIRQHG
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
gtggattcgttgttttcctacagcaacctgggggcgtcggacgatgcctccggtcaacgg
ccggccacggcgctcgacgcgctgcggacggttttcggctacgactccttccgtggccag
caggccgacatcatcgaccatgtggtgcgcggcggcgacgcgctggtgctgatgccgacc
ggcggcggcaagtcgctgtgctaccagatcccggcgctggtgcgcgacggtgtgacggtg
gtggtctccccgctgatcgccctgatgcgcgatcaggtgacggccttgcgggagctgggc
gtgcgcgccgccttcctcaactcgtccctcggcccggccgaggcgcgggaggtggagcgg
gcgatggtgcagggcgagatcgagcttgtctatgtggcgcccgaacggctggtgacgccc
cgcttcctcgacctgctcgaccgcacccggctggcgctgttcgcgctggacgaggcgcat
tgcgtgtcgcagtgggggcatgacttccgcccggaatatctccagctgtcgatcctgcac
gagcgccacccgatggtgccgcgcatcgcgctgaccgccaccgccgacgtgcagacccgc
gccgagatcaaggacaagctggggctgtccgaggcccgcgtcttcctgtccagcttcgac
cggcccaacatcacctaccgcgtggtgccgaagaagagcgagcgccagcagatgctggcc
ttcctgcgcgagaaccatccggaagacgccggcatcgtctattgcatgtcgcgcaacaag
gtggaggaggtcgcggcctggctgaaccaacagggccgcgaggctctgccctaccatgcc
gggctgcccgccgagacgcgcgaggccaaccaggaccgcttcatcaagagcgaaggtctg
gtgatggtcgccactgtcgccttcggcatgggcatcgacaagccgaacgtccgcttcgtc
tgccatctcgacccgcccaagagcctggaagcctattatcaggagaccggccgcgccggc
cgcgacggcctgcccgccaacgcctggatggcctacggcatggccgacgtggtgatgctg
cgccagatgctggagcagtcggaggccggcgacagccaccgccgggtggagcgcggcaag
ctggaggccttgctgggcttctgcgagacgccggactgccgccgccaggtgctgctgaac
tatttcaacgagactctgccggagccctgcggcaactgcgacacctgcctcgacccggtc
gagacctgggacggcaccgtcgccgcgcagaaggcgctgtcggcggtctaccgcaccggc
cagcgctatggcgccggccacctgatcgacgtgctggtcggcaacgccaccgagaaggtg
gtgcagcagaaccatgaccagttgaagaccttcggcgtcggcaaggatctgaccaaggtc
gaatggcagtcggtctaccgccagctggtggcgaccggcctcttgaccgtcgatctggaa
ggctatggcggcttccgcctgaccgatgccggcgttgccgtcatcaaggggcagcgggtg
gtgaagctgcgcaaggacccggtgctggaacgccgtcgtggcgtccacgacgccctgcgc
cgccacacggcgcgtggcggatcggtcggcggtggtctgagtggagagggcgtatcgcgc
tccggtgcccgcggggcgctgtctgcggcggacgacgcgctgtggcatgcgctgaaggac
tgccggacggcgctggcgaaggcgcagagcgtgccgccctatgtgatcttccacgacagc
accttgctggagatggtggcccagcgcccccgcgaccacgccagcttcgcccatctgccg
ggagtcggtggccgcaagttggaacgctacgccgacgccttcctggaggtgatccggcaa
cacggatga
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