Azospirillum sp. TSH100: E6C72_13155
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Entry
E6C72_13155 CDS
T09516
Name
(GenBank) DEAD/DEAH box helicase
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
azs
Azospirillum sp. TSH100
Pathway
azs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
azs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
E6C72_13155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
azs03400
]
E6C72_13155
Enzymes [BR:
azs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
E6C72_13155
DNA repair and recombination proteins [BR:
azs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
E6C72_13155
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
AAA_30
SecA_DEAD
AAA_25
Motif
Other DBs
NCBI-ProteinID:
QCG88793
LinkDB
All DBs
Position
2:complement(93146..96559)
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AA seq
1137 aa
AA seq
DB search
MLDGVPVVEPTPDMPPPIPASSPSILSVQSEGELAVRLTALARRPGGVLLLVRSDARATR
LARLASDLSPDIDVVLLPVDETAAGDRAAPSRAVLGRRAAGLMRLAEGGEPAGGRLVVAS
ADLALQRLPPPRAWVGGQFRLSRGMAYDEAGWRGWFARTGYVLDDRVDEPGEAAIRGAVV
EVFPGHCDRPVRCDIADGVVRDLRLYDPVSQRSVKSIDELTLGPVSELILGPAMLDRLAA
GLAGLGYSLPDGLRRELQEGRRPYGFDLQLPNVFDDCPLLLDLLPDALVVLDAGAHDRIE
ARSDDLAEAGLDRRLRRDDPRLLPIPPLERRLIDADALEDRLAARDLWTVEVGAGHAVEP
VRTERALLRRVAAVLENHGSVLLAARPGEADRLAERVSVALGRPVRRLERWPDPLLAAGD
CAVLTLRTADGFLCDGMTVLVAPRHAGEHRGEVRSRPPLAPSELSTGDFVVHLDYGIGRL
IGLETITSGDGDGEDSTADFLVLEYAHDDRLLVPTADFDRLWRHGSADTGARLDSLKNTH
WLERRAVLEAEIGETAKGILREARRRAREVAPIIDPPADRMRRFAARFGFDPTEGQRHAV
QAVLDAMRQGRPMDHLVCADVGYGKTEVALRAAAAVAFSGHQVAVMAPTSVLARQHVEVF
RRRFAGFGVRVEPLSGAMTKADGDRVRAGLTDGSVHIVVGTHALLSKEVRFQHLGLMVMD
EEQRFGAAQKQALKGRKKGFHSLALSATPIPSTLQGALAGLRGLSIIDTPPARRRPVRTA
VTPRDPATARAALLRELGRGGQAFCVTPRIADLAELEVWIRDLVPSARIAVAHGRLGAGA
LDDAVMGFVDGESDILLATPIIESGIDIPHANTLLLFRPDLFGLGQLHQLRGRVGRGAVQ
GYAYLLTDPDHPLEERAARRLGSLEVIESLGGGFVLSMLDLDQRGAGDLLGEDQNGHLRA
VGTELYQRILADALRALRRQPDERWDPEVTVAVPYSIPSAYIPEEELRIGLHRRIARARE
AGELDALREEVEDRFGPLPDPVERLLGIAELRCRCRVLGVASLGCGPAGVAITLRGERAA
ARAATLAKRLKAFLRAQDDRLSAALEAPNADGRLANAACLLDCVEAIVRKAQRRKRK
NT seq
3414 nt
NT seq
+upstream
nt +downstream
nt
atgcttgacggagttcccgtcgtcgaaccgacccccgacatgccgccgccaatcccggcg
tcgtccccatccatcctgtccgtccagagcgagggagaacttgccgttcggttgacggca
ctcgcccgccggccgggcggcgtcctgttgctcgtgcgcagcgatgcgcgcgccacccgg
ctggcgcggctggcaagcgacctgtccccggacatcgacgtcgttctgttgccggtcgac
gagacggcggcgggcgaccgcgccgcgccgtctcgtgccgtgctggggcgccgcgccgcc
ggtctgatgcgccttgccgaaggaggagagccggctggagggcgactggtggtggcctcg
gccgatctcgccttgcagaggttgccgccgccgcgggcctgggtgggtggtcagttccgt
ctcagccgtggcatggcctatgatgaggcggggtggcgcggttggtttgcccgcaccggc
tatgtgctggacgatcgggtggacgagcccggcgaggctgcgatccgcggcgccgtggtg
gaggtctttcccggtcattgtgaccgcccggtccgttgcgacatagccgacggggtggtg
cgcgacctgcgcctctacgatccggtgtcccagcgttcggtgaagtcgatcgacgagctt
acgctgggtccggtcagcgagctgatcctcgggccggcgatgctcgaccgcctcgccgcc
ggccttgcgggattggggtattccctgccggacggtctgcggcgggaattgcaggaaggt
cggcgtccctacggcttcgatcttcaacttcccaatgtcttcgacgactgtccgctgctg
ctggacctgctgcctgatgcgctggtcgtgctggacgccggcgcgcacgaccgcatcgag
gcgcggtccgacgatctggcggaggccgggctggaccggcggctccggcgcgacgatccc
cgtctcttgccgattccgccgctggaacgccggctgatcgacgccgacgcgttggaagac
aggctcgccgcccgcgatctgtggacggtggaggtgggcgccggccatgccgtggaaccg
gtgcggacggaacgcgcgctgctgcgccgggtggcggctgtgcttgagaaccacggctca
gtcctgcttgcggcccgccccggcgaggccgatcggctggccgagcgggtgtcggtggcc
ttgggccgtccagtgcgtcggctggagcgctggccagatccacttctggcagccggcgat
tgtgccgtgctgacgcttcggacggcggacggctttctctgcgacggcatgaccgtcctt
gtggcgccgcgccatgccggggagcaccgcggggaagtgcggagcagacctccgctggcc
ccgtcggagctgtcgaccggcgacttcgtcgtgcatctggactatggcatcggccggctg
atcgggctggaaaccatcacgtccggcgatggcgacggagaggattcaaccgccgacttc
ttggttctggaatatgcccatgacgaccgtctgctggtgccgaccgccgatttcgaccgg
ttgtggcgccatggctcggccgacaccggtgccaggctcgacagcctgaagaacacccat
tggctggaacgccgcgccgtgctggaggccgagatcggcgagaccgccaagggcatcctg
cgtgaagctcgccgccgagcgcgggaggttgcgccgatcatcgatccgccggccgaccgc
atgcgccgcttcgccgcgcgcttcggcttcgatccgaccgaagggcagcgccacgccgtc
caggctgttctcgatgccatgcgccagggccgtccgatggatcatctggtctgcgccgat
gtcggatatggcaagaccgaggtcgccctgcgcgctgcggcggcggtcgcattctcaggg
catcaggtggcggtgatggccccgacctccgtccttgcccgccagcatgtggaggtattc
cgccgccgcttcgccggcttcggcgtgagggtcgaaccgctgagcggtgccatgaccaag
gcggatggcgaccgtgtgcgcgccgggctgaccgacggatcggtgcacatcgtcgtcggc
acccatgccctgctgtccaaggaggtccggttccagcatctgggcctgatggtgatggac
gaggaacagcgcttcggtgcggcgcagaagcaggcgctgaaggggcggaaaaagggcttc
cacagtctggcgctcagcgccacgccgatcccgagtaccctccaaggcgcgctggccggc
ctgcgtggcctcagcatcatcgataccccgccggcccgccgcaggccggtgcgcactgcc
gtcaccccgcgcgatcccgccaccgcccgcgccgccctgctgcgtgagctggggcgcggc
gggcaggcattctgcgtcacccctcgcattgccgatctggcggagctggaggtctggatc
cgggatctggtgccgtcggcccgcatcgcggtggcgcatggccggctgggggcgggggcg
ctggacgatgcggtgatgggcttcgtcgacggtgagagcgacatcctgctggcaacgccg
atcatcgaatccggcatcgacatcccgcatgccaacacgctgctgctgttccgtcccgac
ctgttcgggcttgggcagctgcaccagctgcgcggccgggtcgggcgtggggcggtgcag
ggctacgcctatctgctcaccgaccccgaccacccgctggaggagcgggcggcccgccgg
ctcggctcgctggaggtgatcgaaagcctgggcggcggcttcgtcttgagcatgctcgac
ctcgaccagcggggggccggcgacctactgggcgaggaccagaacggccatctgcgcgcg
gtggggactgaactctatcagcgcatcctcgccgacgccctgcgggcactgcgccgccag
ccggacgaacgatgggatccggaggtgacggtcgcggtgccgtacagcatcccgtccgcc
tacatcccggaggaggagctgcgcatcggtctgcatcgccggatcgcccgcgcccgcgag
gccggcgagttggacgccctgcgcgaggaggtcgaggaccgtttcggcccgctgccggac
ccggtggagcgactgctgggcatcgccgagctgcgctgccgctgccgtgtgttgggggtt
gcctcgctcggctgcggtccggcaggtgtggcgatcaccttgcgcggcgagcgcgcggcg
gccagggcggcgacgctggcgaaacggttgaaagcttttctgcgggctcaggacgaccgt
ttgtccgccgcgctggaggcgccgaacgccgatggccggctggcgaatgcagcctgcctg
ctcgattgcgtcgaggcgatcgtccgcaaggcgcagcggcgcaagcggaaatag
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