Azospirillum sp. TSH100: E6C72_27730
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Entry
E6C72_27730 CDS
T09516
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
azs
Azospirillum sp. TSH100
Pathway
azs03030
DNA replication
azs03430
Mismatch repair
azs03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
azs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
E6C72_27730 (dnaE)
03430 Mismatch repair
E6C72_27730 (dnaE)
03440 Homologous recombination
E6C72_27730 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
azs03032
]
E6C72_27730 (dnaE)
03400 DNA repair and recombination proteins [BR:
azs03400
]
E6C72_27730 (dnaE)
Enzymes [BR:
azs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
E6C72_27730 (dnaE)
DNA replication proteins [BR:
azs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
E6C72_27730 (dnaE)
DNA repair and recombination proteins [BR:
azs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
E6C72_27730 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HHH_3
DUF655
T2SSK
Motif
Other DBs
NCBI-ProteinID:
QCG91574
LinkDB
All DBs
Position
5:506559..510050
Genome browser
AA seq
1163 aa
AA seq
DB search
MPHADFIHLRVHSAYSLSEGAIKVKELVKLCLKQQMPAVAVTDTGNLFGALEFALAASDA
GVQPIIGTVLGITRVGPAQTKPGLPGKAAATPDQLVLLCQNEEGYRNLTALVSKAFLESD
PLAGPQVTLDALEGRSAGLIALTGGPAGSLGRLLHEGQKDLALDVLERLKRLFPGRLYVE
LQRHEGGRGHFATVENAVEPALIDLAYAHDLPLVATNDCYFATEDMYEAHDALLCIAEGA
YLSQEDRRRLTPDHRFKSAEEMRLLFADLPEALDNTVAIARRCSFLLKPIKPILPPFACE
GGRTEDDELRAQSRAGLEERLEKVVYTPEMTPEQRAETRKTYFERLEFELDVIVKMKFPG
YFLIVSDFIKWAKNHDIPVGPGRGSGAGSVVAWALTITDLDPLRFGLLFERFLNPERVSM
PDFDIDFCQDRREEVIRYVQNKYGYDRVAQIITFGKLQARAVLRDVGRVLQMPYGQVDKI
CKMVPNNPANPVTLQQALDSEEMLRQARDGDETVRHLIDIALKLEGLYRHASTHAAGVVI
GDRPLQELVPLYRDPRSDMPVTQFNMKYVEQAGLVKFDFLGLKTLTVLKTAVDLIPEKPD
LTTVPLDDEKSYQLLSRAEATGVFQLESSGMRDVLRRLKPNRLEDIIALVSLYRPGPMDN
IPKYIRVKNGEEKADYMHDSLEGILKETFGIMIYQEQVMQIAQVLSGYSLGGADLLRRAM
GKKIKEEMDNQRKIFCDGAEARGVKADLASMIFDQVMKFAGYGFNKSHAAAYALVAYHTA
YLKANHPVEFMAASMTLDLGNTDKLNVFRQELARLRIRLLTPDINRSDSIFGVEQLADGT
KAVRYALAAVKGVGLPAMKAVVEERRKNGPFKSLFDFARRLDLKTINKRQLENLACAGAF
DGLNPNRAQVHAALETIIRYAQAEAAERDSGIGNLFGGGGGGLPEPEMPKVKDWEPLEKL
KHEFGAIGFYLSAHPLDAYSGPLGRMKVVRSAELQTAIAKGGSTRYKMAGIVVSKKEKTA
KSGNRFAFVELSDATGGYEVTLFSEVLAANRDLLEPGRPVLMTVDAQLNGEEVRLTCQEI
RPLEEAVASVSAGLRVVLRDPGPIEHLRATLDRLSRGKSRINVLVEVDPLKEIEIELPGS
YTITAQSRSALKAVPGVVEVAEL
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgccccacgccgacttcatccacctgcgcgtccattccgcctattcgctgtcggaaggt
gcgatcaaggtgaaggagctggtcaagctctgcctgaagcagcagatgccggccgtcgcg
gtcaccgacaccggcaacctgttcggcgcgctggaattcgcgctggcggcatccgatgcc
ggcgtgcagccgatcatcggcaccgtgctgggcatcacccgcgtcggcccggcccagacg
aagccgggcctgcccggcaaggcggcggccactcccgaccagctcgtcctgctctgccag
aacgaggagggctaccgcaacctgaccgcgctggtgtccaaggccttcctggaatcggac
ccgctggccggcccgcaggtgacgctcgacgcgctggaggggcgctccgccgggctgatc
gcgctcaccggcggccccgccggctccctcggccggctcctgcacgaggggcagaaggat
ctggcgctcgacgttctggagcggctgaaacggctgttccccggccgcctctatgtcgaa
ttgcagcggcacgagggcgggcgcggccatttcgccacggtggagaacgccgtcgagccg
gcgctgatcgacctcgcctacgcgcacgacctgccgctggtcgccaccaacgactgctat
ttcgccaccgaggacatgtacgaggcgcacgacgcgctgctctgcatcgccgagggcgcc
tatctcagccaggaggaccgccgccgcctgaccccggaccaccgcttcaagtcggcggag
gagatgcggctgctgttcgccgacctgccggaggcgctggacaacaccgtcgccatcgcc
cggcgctgctccttcctgctgaagccgatcaagccgatcctgccgccgttcgcctgcgaa
ggcggccggaccgaggacgacgagctgcgcgcccagtcgcgcgccggcctggaagagcgg
ctggagaaggtcgtctacaccccggagatgacgccggagcagcgggcggagacccgcaag
acctatttcgagcggctggagttcgagctggacgtcatcgtcaagatgaagttccccggc
tacttcctgatcgtgtcggacttcatcaaatgggcgaagaaccacgatatccccgtcggt
ccgggccgcggatcgggcgccggctccgtcgtcgcctgggcgctgaccatcaccgacctc
gacccgctgcgcttcggcctgctgttcgagcgcttcctgaaccccgaacgcgtgtcgatg
cccgacttcgacatcgacttctgccaggatcgccgcgaagaggtcatccgctacgtccag
aacaagtacggctacgaccgcgtcgcccagatcatcaccttcggtaagctccaggcgcgc
gccgtgctgcgcgacgtcggccgcgtcctgcagatgccctacgggcaggtcgacaagatc
tgcaagatggtgccgaacaacccggccaatccggtgaccttgcagcaggcgctggacagc
gaggagatgctgcggcaggcgcgcgacggcgacgagaccgtgcgtcacctgatcgacatc
gcgctgaagctggagggcctctaccgccacgcctcgacccatgccgccggcgtggtgatc
ggcgaccgccccttgcaggagctggtgccgctctaccgcgacccgcgctccgacatgccg
gtcacccagttcaacatgaaatatgtcgaacaggccggtctggtgaagttcgacttcctg
ggattgaagacgctgaccgtgctgaagacggcggtcgacctgatccccgagaagccggac
ctgaccaccgtcccgctcgacgacgagaagagctaccagctgctcagccgcgccgaggcg
accggcgtgttccagctggaaagctcgggcatgcgcgacgtgctgcgccggctgaagccg
aaccggctggaggacatcatcgcgctggtgtcgctctaccgtcccggcccgatggacaac
atcccgaaatacatccgggtgaagaacggcgaggaaaaagccgactacatgcatgacagc
ctggaaggcatcctgaaggagaccttcgggatcatgatctaccaggaacaggtcatgcag
atcgcccaggtgctgtccggctattcgctgggcggcgccgatcttctgcgccgcgccatg
ggcaagaagatcaaggaggagatggacaaccagcgcaagatcttctgcgacggcgccgag
gcgcgcggcgtcaaggccgatctggccagcatgatcttcgatcaggtcatgaagttcgcc
ggctacggcttcaacaagagccacgccgccgcctatgccctggtcgcctaccacaccgcc
tatctgaaggcgaaccacccggtggagttcatggcggcgtcgatgacgctcgacctcggc
aacaccgacaagctgaacgtcttccgccaggaactcgcccgcctgcgcatcaggctgctg
acgccggacatcaacaggtccgactccatcttcggggtggagcagctggccgacgggacc
aaggcggtgcgctacgcgctggccgccgtcaagggcgtcggcctgcccgccatgaaggcg
gtggtcgaggagcggcggaagaacggcccgttcaagagcctgttcgacttcgcccgccgc
ctggatctgaagaccatcaacaagcgccagttggagaatctcgcctgcgccggcgccttc
gacgggctgaaccccaaccgcgcccaggtccatgccgcgctggagaccatcatccgctat
gcccaggcggaggcggcggagcgcgacagcggcatcggcaacctctttggcggcgggggc
gggggactgcccgaacccgagatgcccaaggtcaaggactgggaaccgctggagaagctg
aagcacgagttcggcgccatcggcttctacctgtcggcccacccgctcgacgcctattcc
ggcccgctcggccgcatgaaggtggtgcgctcggccgaactccagaccgccatcgcgaag
ggcggttccacccgctacaagatggccggcatcgtggtgtcgaagaaggagaagaccgcc
aagtccggcaaccgcttcgccttcgtcgagctgtcggacgccaccggcggctatgaggtg
acgctgttctccgaggtgctggccgccaaccgcgacctgctggagcccggccgcccggtg
ctgatgacggtggacgcccagctgaacggcgaagaggtccgcctgacctgccaggagatc
aggccgctggaggaggccgtcgcctcggtcagcgcaggcctgcgcgtcgtcctgcgcgac
cccggcccgatcgagcatctgcgcgccacgctcgaccggctgtcgcgcggcaagagccgc
atcaacgtgctggtggaggtcgatccgctgaaggagatcgagatcgagctgcccggcagc
tacaccatcaccgcccagagccgctccgccctgaaggcggtgccgggtgtggtggaggtg
gcggagctgtga
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