Azospirillum sp. TSH58: TSH58p_09705
Help
Entry
TSH58p_09705 CDS
T05449
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
azt
Azospirillum sp. TSH58
Pathway
azt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
azt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TSH58p_09705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
azt03019
]
TSH58p_09705
Enzymes [BR:
azt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TSH58p_09705
Messenger RNA biogenesis [BR:
azt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TSH58p_09705
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
HEM4
SUa-2TM
Motif
Other DBs
NCBI-ProteinID:
AWJ83777
LinkDB
All DBs
Position
1327242..1328675
Genome browser
AA seq
477 aa
AA seq
DB search
MTEFSGLGLIEPLLRAVAEEGYQTATPIQAGAIPVLLEGRDVLGLAQTGTGKTAAFTLPI
LQRLFQNKKRVQAKAPRTLILTPTRELALQIGESFRTYGRHLPIRRTVIHGGVGQSPQVA
ALARGTDVLVATPGRLLDLMAQKQCVLDQVEIFVLDEADRMLDMGFIRDVRKVVAVLPKQ
RQTLLFSATMPEGVVELAHSILTDAERIEVAPQSTTVERIAQRVLFVDRADKRRLLADLL
QDGAMGRTIVFARTKHGADRIADHLKKAGVAADAIHGDKSQSARVRALESFRSGDLKALV
ATDIAARGIDIDGITHVINFDLPNEPESYVHRIGRTARAGTDGSAVSFCDAEEVAYLKAI
EKTIRQPVPADHDHPYHASVVAAIHASSAKPPKPAPKQPRPGRGQPQQAGGNKPQGQKPQ
APKAHGAKPPVPQGARVAGATGDQPLKAKVSANQQNRHNRRPAPHGGQPGGNKRSAA
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaattcagtggcctcggcctgatcgagccccttctgcgcgccgtcgccgaagag
ggttaccagaccgccacgccgatccaggccggcgccatccccgttcttctggagggccgc
gacgtgctcggcctcgcccagaccggcaccggcaagaccgccgccttcaccctgccgatc
ctccagcggctgttccagaacaagaagcgcgtgcaggccaaggcgccgcgcacgctgatc
ctgacgccgacgcgcgagctggcgctgcagatcggcgagagcttccgcacctacggccgg
cacctgccgatccgccgcacggtgatccacggcggcgtcgggcagagcccgcaggtcgcg
gcgctcgcccgcggcaccgacgtgctggtggcgacgccgggccgcctgctcgacctgatg
gcccagaagcagtgcgtgctcgatcaggtcgagatcttcgtcctggacgaggccgaccgc
atgctcgacatgggcttcatccgcgacgtgcggaaggtggtcgcggtcctgccgaagcag
cgccagaccctgctgttctccgccaccatgccggaaggcgtggtcgagctggcgcacagc
atcctgaccgacgccgagcggatcgaggtggcgccgcagtccaccacggtggagcgcatc
gcccagcgcgtgctgttcgtggaccgcgccgacaagcgccgcctgctcgccgacctgctg
caggacggcgccatggggcggacgatcgtcttcgcccgcaccaagcacggcgccgaccgc
atcgccgaccacctgaagaaggccggcgtcgcggcggacgcgatccacggcgacaagtcg
cagtcggcccgcgtgcgcgcgctggagtccttccgcagcggcgacctgaaggcgctggtg
gcgaccgacatcgcagcgcgcggcatcgacatcgacggcatcacgcacgtcatcaacttc
gacctgccgaacgagccggaaagctacgtccaccgcatcggccgcaccgcccgcgccggc
accgacggcagcgcggtgtccttctgcgacgcggaggaggtggcctacctgaaggccatc
gagaagaccatccgccagccggtcccggcggaccacgaccacccctaccacgcctcggtg
gtggcggcgatccacgcctcctccgccaagccgccgaagccggcgcccaagcagccccgt
ccgggccgcggccagccccagcaggcgggcggcaacaagccgcagggccagaagcctcaa
gccccgaaggcccatggcgcgaagccgccggtgccgcagggcgcgcgggtggccggcgcc
accggcgaccagccgctgaaggccaaggtgtcggccaaccagcagaaccgccacaaccgc
cgtcccgccccgcacggcggtcagccgggtgggaacaagcggtccgcggcctga
DBGET
integrated database retrieval system
