Azospirillum sp. TSH58: TSH58p_11525
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Entry
TSH58p_11525 CDS
T05449
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
azt
Azospirillum sp. TSH58
Pathway
azt03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
azt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
TSH58p_11525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
azt03400
]
TSH58p_11525
Enzymes [BR:
azt01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
TSH58p_11525
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
TSH58p_11525
DNA repair and recombination proteins [BR:
azt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
TSH58p_11525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
AWJ85334
UniProt:
A0A2S1XLP5
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All DBs
Position
1717919..1718761
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AA seq
280 aa
AA seq
DB search
MPELPEVETVCRGLAPHLEGRTLVQVLQRRANLRVPFPAGFCERLTGRRVESVRRRAKYI
LVHLDDGTVLIAHLGMSGRMIITPERPAAWGAHDHVVLETDAGTVVTFNDARRFGLMDLA
MAETLAEHPLLRALGPEPLGNAFSGPVLADRLAGRMTSIKAALLDQSVVAGLGNIYVSEA
LFLARLSPTRIAATVTGAKAERLATAIREVLERAIAAGGSSLRDYRQASGELGYFQHQFS
VYDREGAPCPGCSCDVAKTGGIRRIVQAGRSTFYCPQRQR
NT seq
843 nt
NT seq
+upstream
nt +downstream
nt
atgcccgagcttcccgaagtcgaaaccgtctgccgtggcctcgccccgcatctggagggg
cggacgctggtccaggtgctccagcgccgcgccaacctgcgcgttccctttccggccggc
ttctgcgagcggctgaccgggcgccgcgtcgagtcggtgcgccgccgcgccaaatacatc
ctggtccatctcgacgacgggacggtgctgatcgcccatctcggcatgtcgggccgcatg
atcatcacgccggaacggcccgccgcctggggcgcccacgaccatgtcgtgctggagacc
gacgccgggacggtggtgaccttcaacgacgcccgccgtttcggcctgatggacctcgcc
atggcggagacgctcgccgagcacccgctgctgcgcgccctcgggccggagccgctgggc
aacgccttctccggaccggtgctggccgaccggctggccgggcggatgaccagcatcaag
gccgccctgctggatcagagcgtggtcgccgggctcggcaacatctacgtgtcggaggcg
ctgttcctcgcccgcctcagccccacgcgcatcgccgccacggtgaccggcgccaaggcg
gagcggctggccacggcgatccgcgaggtgctggagcgggccatcgccgcggggggatcg
tccttgcgcgactaccggcaggcgtcgggggagctcggctacttccagcaccagttctcg
gtctacgaccgcgagggcgcgccctgtccgggctgcagctgcgacgtggcgaagaccggg
ggcatccgccgcatcgtccaggcgggccgttcgactttctattgtccgcaacgccagcgt
tga
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