Azospirillum sp. TSH58: TSH58p_14810
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Entry
TSH58p_14810 CDS
T05449
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
azt
Azospirillum sp. TSH58
Pathway
azt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
azt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TSH58p_14810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
azt03019
]
TSH58p_14810
03009 Ribosome biogenesis [BR:
azt03009
]
TSH58p_14810
Enzymes [BR:
azt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
TSH58p_14810
Messenger RNA biogenesis [BR:
azt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
TSH58p_14810
Ribosome biogenesis [BR:
azt03009
]
Prokaryotic type
rRNA processing factors
TSH58p_14810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AWJ84684
UniProt:
A0A2S1XJV1
LinkDB
All DBs
Position
complement(2412260..2415472)
Genome browser
AA seq
1070 aa
AA seq
DB search
MAKRMLVDATHPEETRVAVVNGNRLEDLDFEIATRKQLKGNIYLAKVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYRIPIADREALLAEERRLEEQAEARAEAAADGAVMAEPIRPE
VVVEENSPMPGSYADAEGDGFEGDVPAFATDAGSDESAESDEAPDGAAQAESPDVIGGDE
VEEAHRRRTRPLRSYKIQEVIKRRQVMLVQVTKEERGNKGAALTTYLSLPGRYCVLMPNT
GRGGGISRKITNPADRKRLKEILSDLDIPEGMAVILRTAGLERSKQEIKRDLEYLLRLWD
DIRVQTLKSSAPCLIYEEANLIKRSIRDLYTDDIDEIWVEGSAGFNTARDFMRMMMPSHT
KRVMQYQDDTIPLFHRYQVETQIDAIHSPVVQLRSGGYIVINPTEALVSIDVNSGKSTRE
RNIEETAYKTNLEAADEVARQLRLRDLAGLIVIDFIDMEEPRNNAAVERRLKEAMKNDRA
RIQLGRISAFGLLELSRQRLRPSLLETNFERCPHCSGTGVIRSVESASLHVLRAIEEEGI
RKRSSEITVFVPTRIALYILNQKRGELAKIEDRYRFRVMVQADDTLIAPDLRLERVKART
PEDDVPLVSAERVLAETDRILAAEAEEAEEEAPVVEAAEAAGAAGAEVAERADAAGESEG
DRRRRRRRRRGRGRDREDGRAPFGESADASDEATEGDEVEAEAADADETAIDEEAIERAQ
IEAPEFVINDVDVGPAHIEDDEDEDADLAASEAEDGADAFETNGDGNGDANGERKKRRRG
KRGGRRRSRQREGLEAGEGLPAAESEDGTEGEAEAESFPTAVEAGRAVNPPELPADMEPV
EFDWVLTSAAAAEAAPESAADTAVEVPAAEPAAEEAPARKPRRGRAKATAAEAVTAQAVT
AEPEAAPAKPKRAAKGAKAAPKASAKAVAAKAPEEVAAQAPAKPSRSRKAKAEAVEAAPA
PAPVAAPVAAPVAAPVAEEAKKRPSRKRKTAADAPAEAAPAPAPVAAPVAEEPKKRPARK
RKTAADAPAEAAPAPAVTEAPEASVAPPESEPASADSAPEAKPRRGWWSR
NT seq
3213 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcgcatgctggtggacgccacgcacccggaggaaacccgggttgccgtggtc
aatgggaacagactcgaagacctcgacttcgaaatcgccacccggaagcaactcaagggc
aacatctaccttgccaaggtgacccgggtcgagccgtcgcttcaggcggccttcgtggaa
tatggcgggaaccggcacggcttcctggccttctcggaaatccatcccgactactaccgc
atcccgatcgccgaccgcgaggccctgctggccgaggagcgccggcttgaggagcaggcc
gaggcccgcgccgaggccgccgccgacggcgcggtgatggccgagccgatccgcccggag
gtggtggtcgaggagaactccccgatgcccggctcctacgcggatgccgagggcgacggg
ttcgagggcgacgtcccggccttcgccacggacgccggttcggatgagtccgcggagtcg
gatgaggcgccggacggcgccgcccaggccgaaagccccgacgtcatcggcggggacgag
gtcgaggaggcccaccgccgccgcacccgcccgctgcgcagctacaagatccaggaggtc
atcaagcgccggcaggtcatgctggtccaggtgaccaaggaggagcgcggcaacaagggc
gcggcgctgaccacctacctgtcgctgccgggccgctactgcgtgctgatgcccaacacg
ggccgcggcggcgggatctcccgcaagatcaccaaccccgccgaccgcaagcgcctgaag
gagatcctctccgatctcgacattccggaaggcatggcggtcatcctgcgcaccgcgggg
ctggaacgctccaagcaggagatcaagcgcgacctcgaatatctgctgcgcctgtgggac
gacatccgcgtccagacgctgaagtcctccgcgccctgcctcatctatgaggaggcgaac
ctcatcaagcgctcgatccgcgatctctacaccgacgacatcgacgagatctgggtcgag
ggcagcgccggcttcaacaccgcgcgcgacttcatgcgcatgatgatgccgagccacacc
aagcgcgtcatgcagtaccaggacgacacgatcccgctgttccaccgctatcaggtggaa
acgcagatcgacgcgatccacagcccggtggtgcagctccgctccggcggctacatcgtc
atcaacccgaccgaggcgctggtttccatcgacgtcaactcgggcaagtcgacgcgcgag
cgcaacatcgaggaaacggcctacaagaccaacctcgaagccgccgacgaggtggcgcgc
cagctccgcctgcgcgacctcgcgggcctcatcgtgatcgatttcatcgacatggaggag
ccccgcaacaacgccgcggtggagcgccgcctgaaggaggcgatgaagaacgaccgggcg
cgcatccagctcggccgcatctccgccttcggcctgctggagctgtcgcgccagcgcctg
cgcccgtcgctgctggaaaccaacttcgagcgttgcccgcactgctccggcaccggcgtc
atccgctcggtggagtccgcctcgctgcacgttctgcgcgccatcgaggaggagggcatc
cgcaagcggtcgtcggagatcactgtcttcgtgccgacccgcatcgcgctctacatcctc
aaccagaagcgcggcgagctggccaagatcgaggaccgctaccggttccgcgtcatggtc
caggccgacgacacgctgatcgcgccggatctgcggcttgagcgcgtcaaggcccgcacg
ccggaggacgacgtgccgctggtcagcgccgagcgcgtcctggccgagaccgaccgcatc
ctggccgccgaggccgaggaggccgaggaggaggcgcccgtcgtcgaggccgccgaggcc
gccggggccgccggggccgaggtcgcggaacgcgccgacgccgccggggagagcgagggc
gaccgccgccgccgccgccgccgccgccgtggccgcgggcgtgaccgcgaggatggccgc
gcgccattcggcgaatccgccgacgcgtccgacgaggcgaccgagggcgacgaggtcgaa
gccgaggccgccgacgccgacgagacggcgatcgacgaggaagcgatcgagcgcgcccag
atcgaagcgccggagttcgtcatcaacgacgtcgatgtcggccccgcccacatcgaggac
gacgaggacgaggatgccgatctggccgcctccgaggcggaagacggcgccgacgccttc
gagacgaacggcgacggcaacggtgacgccaatggcgagcgcaagaagcgccgccgcggc
aagcgcggtggccgccggcggtcccgccagcgcgagggcctggaggccggcgagggtctg
cccgccgccgaatcggaagacggcaccgagggcgaggcggaagccgagtccttcccgacc
gccgtcgaggccggtcgcgccgtcaacccgccggagctgccggcggacatggaaccggtc
gagttcgactgggtcctgaccagcgcggcggcggccgaggccgctccggaatccgcggcg
gacaccgctgtggaggttccggccgcggagcccgccgccgaggaggctccggcccgcaag
ccgcgccgtggccgcgccaaggcgacggccgccgaggcggtgacggcccaagcggtgacg
gcggagccggaagcggcccccgccaagccgaagcgcgccgcgaagggcgccaaggccgcc
ccgaaggcttccgccaaggccgttgcggccaaggctccggaagaggtcgccgcccaggcg
ccggccaagccgtcgcgcagccgcaaggcgaaggccgaggctgtcgaggccgctcccgcg
ccggcgcccgtcgcggccccggttgcggccccggttgcggccccggtcgccgaggaggcg
aagaagcgcccgtcccgcaagcgcaagaccgcggcggacgcccccgccgaggcggcgccc
gctccggccccggtcgcggccccggtcgccgaggagccgaagaagcgcccggcccgcaag
cgcaagaccgcggcggacgctcccgccgaagcggctcccgctccggccgtcaccgaggcc
cccgaggcttcggtcgcaccgccggagtccgagcccgccagcgcggactccgctccggag
gccaagccgcgccggggctggtggagccgctga
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