Azospirillum sp. TSH58: TSH58p_17015
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Entry
TSH58p_17015 CDS
T05449
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
azt
Azospirillum sp. TSH58
Pathway
azt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
azt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TSH58p_17015 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
azt03400
]
TSH58p_17015 (mfd)
Enzymes [BR:
azt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TSH58p_17015 (mfd)
DNA repair and recombination proteins [BR:
azt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
TSH58p_17015 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
Helicase_C
DEAD
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
SecA_DEAD
AAA_16
UB2H
AAA_22
RecG_dom3_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AWJ85071
UniProt:
A0A2S1XKV6
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All DBs
Position
2881990..2885622
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AA seq
1210 aa
AA seq
DB search
MPSFEQLQPGRSGRLLVGGAPAGHDARVLVDLAKRAGSAGLLHVALDDTRAAQLAEALAF
FAPSLEVQVFPAWDCLPYDRVSPNGGIVAKRIDTLTRLLARKADAAPLVVLTTVNAMVQK
VPPRAAFRDAVFSARLRDRIDLEKLQRYLAGNGYTRAQTVREPGEFAVRGGIIDLFPPGT
DEPLRLDLFGDELEAVRSFDPMSQRTTDKRDGIDLKPMSEVFLDEAGIARFRSGYRELFG
AVTDDDPLYEAISAGRKYGGMEHWLPLFHETMESLLAYMPKAILSLDHQATESRDSRIAQ
VVDFHASRESMIVIEKRTGSPVYKPVPVGMMFLDAQAWDDLFAAHAVAQLQPFGTPPGIK
GTLDAGGRRGHDFAEERARPDVNVFEAVKDHIRALRADGRRVLVAGYSAGSRDRLMTVLG
DHGIPGLEPAESIEDVRRFDRNIIGMIVLGMEHGFTSADMAVITEQDILGDRLVRPAAKK
KRKAANFIAEYTALASGDLVVHMDHGIGRYDGLETLEVSGAPHDCLRLIYEGGDKLYVPV
ENIEVLTRYGSEDAHAQLDKLGGAGWQGRKARVKKRLKDMAEALLKIAAERMLKKADPVY
TPEGVYQEFAARFPYPETDDQLRAIEEVFTDLGSGRPMDRLVCGDVGFGKTEVALRAAFL
VAMSGQQVAVVVPTTLLARQHFKTFTTRFAGLPLRVVQLSRMVTPKEQTKVKQELTEGTA
DIVIGTHALLGKGVQFKQLGMVIVDEEQHFGVKQKERLKELRADVHVLTLTATPIPRTLQ
MALSGVRELSLIATPPVDRLAVRTFVLPYDPVVVREAILREHYRGGQTFYVCPRVEDLPK
VAERVRELVPEVKVVTAHGQMPASELEEVMTAFDEGKFEVLLATNIIESGIDIPNANTLI
VHRADMFGLAQLYQIRGRVGRSKVRGYAYLTYAPNKALTGTAQQRLHVIETLDSLGAGFQ
LASHDMDIRGAGNLLGEEQSGHVKEVGVELYQHMLEEAVANARANMDGQVPSGAEDQPWT
PQINLGTPVLIPEDYVPDLTVRLSLYRRIAELVDRAEIDGFAAELIDRFGKLPGEVENLL
DVVTIKQLCRQAGVERVDAGPKGAVLTFRNNSYAEPAKLLTYISQQMSLMKLRPDHKLVY
TREWADEAQRVRGVNRLMSDLAQMAGGGAVPKGEAPPPPPPPPPPPPRPSALKAGSKFGR
NIPSRPFGRR
NT seq
3633 nt
NT seq
+upstream
nt +downstream
nt
ttgcccagcttcgaacagttgcagccgggacgctccggccgccttctggtcggcggcgcc
cccgccggtcatgacgcccgcgtcctcgtcgacctcgccaagcgggcggggagtgccgga
cttctccacgtcgcgctcgacgacacccgcgccgcccaattggcggaggcgctggccttc
ttcgcgccgtcgctggaggtgcaggtcttcccggcctgggactgcctgccctacgaccgc
gtgtcgcccaacggcggcatcgtggcaaagcgcatcgacacgctgacccgcctgctggcg
cgcaaggcggacgcggcaccgctggtcgtgctgaccaccgtcaacgccatggtgcagaag
gtgccgccccgcgccgccttccgcgacgcggtgttctcggcacgcttgcgcgaccggatc
gacctggagaagctgcagcgctatctggccggcaacggctacacccgcgcccagacggtg
cgcgagccgggcgagttcgccgtgcgcggcggcatcatcgacctgttcccgccgggcacc
gacgagccgttgcgcctcgacctgttcggcgacgagctggaggccgtgcgcagcttcgac
cccatgtcgcagcgcaccaccgacaagcgcgacggcatcgacctgaagccgatgtccgag
gtgttcctggacgaggccggcatcgcccgcttccgctccggctaccgcgagctgttcggc
gccgtcaccgacgacgacccgctctacgaggcgatcagcgccgggcgcaagtacggcggc
atggagcattggctgccgctgttccacgagaccatggaatcgctgctggcctacatgccc
aaggccatcctgtcgctggaccatcaggcgacggaatcgcgcgattcgcgcatcgcgcag
gtggtggacttccacgcctcccgcgagagcatgatcgtcatcgagaagcggacgggctcg
ccggtctacaagccggtgccggtcggcatgatgttcctcgacgcccaggcctgggacgac
ctgttcgccgcccacgccgtggcgcagctccagcccttcggcacgccgccggggatcaag
ggcacgctggacgccggcggccgccgcggccacgacttcgcggaggagcgggcgcggccc
gacgtcaacgtcttcgaggcggtgaaggaccacatccgcgcgctgcgggccgacgggcgg
cgggtgctggtggccggctattccgcggggtcgcgcgaccgtctgatgacggtgctgggc
gaccacggcattccggggctggagccggcggagagcatcgaggacgtccgccgcttcgac
cgcaacatcatcggcatgatcgtgctggggatggagcacggcttcacctccgccgacatg
gccgtcatcaccgagcaggacatcctcggcgaccgcctcgtccgcccggcggcgaagaag
aagcgcaaggccgccaacttcatcgccgaatacacggcgctggcgtcgggcgacctcgtg
gtgcacatggaccacggcatcgggcgctacgacgggctggagacgctggaggtgtccggc
gccccccacgactgcctgcggctgatctacgagggcggcgacaagctctacgtccccgtc
gagaacatcgaggtgctgacccgctacgggtcggaggacgcccacgcgcagctcgacaag
ctgggcggggccggctggcagggccgcaaggcccgcgtcaagaaacgcctgaaggacatg
gccgaggcgctgctgaagatcgccgccgagcggatgctgaagaaggccgacccggtctac
acgccggagggcgtctatcaggagttcgccgcccgcttcccctacccggagacggacgac
cagctgagggccatcgaggaggtcttcaccgatctcggctcgggccgtcccatggaccgg
ctggtctgcggcgacgtcggcttcggcaagacggaggtggctctgcgcgccgccttcctc
gtcgccatgagcggccagcaggtcgccgtggtggtgccgaccacgctgctggcgcgccag
catttcaagaccttcaccacccgctttgccgggctgccgctgcgcgtcgtccagctgtcg
cgcatggtgacgcccaaggagcagaccaaggtcaagcaggagctgacggagggcaccgcc
gacatcgtgatcggcacccacgcgctgctcggcaagggcgtgcagttcaagcagctcggc
atggtcatcgtggacgaggagcagcatttcggcgtgaagcagaaggagcggctgaaggag
ctgcgcgccgacgtgcacgtcctgacgctgaccgccacgccgatcccgcgcacgctccag
atggcgctgtccggcgtgcgcgagctgtcgctgatcgccaccccgccggtggaccgtctg
gcggtgcgcaccttcgtgttgccctacgaccccgtggtggtgcgcgaggccatcctgcgc
gagcattaccggggcggccagaccttctacgtctgcccgcgcgtcgaggacctgcccaag
gtcgccgagcgggtgcgtgagctggtgcccgaggtcaaggtcgtcaccgcccacggccag
atgccggccagcgagctggaggaggtgatgaccgccttcgacgagggcaagttcgaggtg
ctgctcgccaccaacatcatcgagagcggcatcgacatccccaacgccaacacgctgatc
gtgcaccgggcggacatgttcggtctggcccagctctaccagatccgcgggcgcgtcggc
cggtcgaaggtgcgcggctacgcctacctcacctacgcgccgaacaaggcgctgaccggc
acggcgcagcagcggctgcacgtcatcgagacgctggacagcctgggggccggcttccag
ctcgccagccacgacatggacatccgcggcgccggcaacctgctgggcgaggagcagtcc
ggccatgtcaaggaggtcggcgtcgagctgtaccagcacatgctggaggaggccgtcgcc
aacgcccgcgccaacatggacgggcaggtgccgagcggtgcggaggaccagccctggacc
ccgcagatcaacctgggcacgccggtgctgatcccggaggactatgtccccgacctgacg
gtgcgcctgtcgctctaccgccgcatcgcggagctggtggaccgggcggagatcgacggc
ttcgcggcggagctgatcgaccgcttcggcaagctgccgggcgaggtggagaacctgctc
gacgtcgtgaccatcaagcagctctgccggcaggcgggggtggagcgggtggacgccgga
ccgaagggcgccgttctgaccttccgcaacaacagctacgccgagccggccaagctgctg
acctacatcagccagcagatgagcctgatgaagctgcggcccgaccacaagctggtctac
acccgcgaatgggccgacgaggcccagcgggtgcgcggcgtcaaccggctgatgagcgat
ctggcgcagatggccggtggcggcgccgtgccgaagggcgaggcgccgccgccgccgccg
ccgccgccgccgccgccgccgcggcccagcgcgctgaaggccggatcgaagttcgggcgg
aacatcccctcgcgtcccttcgggcggcgctga
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