Arthrobacter zhaoxinii: N2K95_11250
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Entry
N2K95_11250 CDS
T09564
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
azx
Arthrobacter zhaoxinii
Brite
KEGG Orthology (KO) [BR:
azx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
azx03019
]
N2K95_11250 (hrpA)
Enzymes [BR:
azx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
N2K95_11250 (hrpA)
Messenger RNA biogenesis [BR:
azx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
N2K95_11250 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
WHD_HA2
AAA_22
AAA_19
AAA_23
nSTAND3
ABC_tran
PhoH
nSTAND_NTPase5
Motif
Other DBs
NCBI-ProteinID:
UWX96242
UniProt:
A0ABY5YN47
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All DBs
Position
2401636..2405541
Genome browser
AA seq
1301 aa
AA seq
DB search
MALTISYPEQLPVSERREDIMAAIAANQVTVIAGETGSGKTTQIPKMCLELGLAENGLIG
HTQPRRLAARTVAERIASELDVELGEEVGFQVRFTGETGRKTKVKLMTDGILLAEIRHDP
MLKKYSTIIIDEAHERSLNIDFILGYLRRLLPTRPDLKVIITSATIDPQRFAEHFALNGT
PAPIIEVSGRTFPVEIRYRPLNQPADGGSDEEGIEDELEEDRDPVDAVCDAVDELSREAP
GDVLVFFSGEREIRDAADALRSSVSRNPRLANTEILPLFARLSLAEQHKVFSPGRNRRII
LATNVAETSLTVPGIKYVIDTGTARISRYSHRTKVQRLPIERISQASANQRSGRCGRVSD
GIAIRLYSAEDFESRPEFTDPEILRTNLAAVILQMAAMGVAKGPKDVADFPFVQPPDSKA
INDGAVLLRELGALHPQGGITEVGRKLSQLPVDPRLGRMIVEAGNRGCTKEVMVLTAALT
IQDPRERPSKDDPARAQKAAEMHKRFVDENSDFTGYLNLWRYVEEKQKELSSSAFRRMCK
NEFLNFLRIREWQDLFAQLRQLAKPLGITLAPEPVDPVGKYREIHMSLLAGLLSHIGLYD
QRKREYTGARGTRFAVFPGSALFKKSPDWVMAAELVETSRLWARVAAKFDPLWVEDVAGH
LVKRTYSEPHWSKSRGAVMAYEKVTLYGVPVVPQRSINYGRIDPVLSREMFIRHALVEGD
WRTHHKFFHRNQALLAEVEELENRVRRRGLRVDDETLFEFYDERVGADVVSERHFDKWWK
HARHEDPALLDFDPDALRTDDAEGLDEKDFPKSFFYGSFELPLTYEFTPGVPTANDGVTV
EVPVLFLNQLTPGPFAWQIPGLRAELITALIKSLPKAIRKNFVPAPDVARSAAAALAADF
DPASDELEPSLELVLRRLKGSIIPPGSWNWDAVPDHLRMTFTVVDSSGRVLDEGKDLAAL
QESLAPATRRAIAESLGATPSTVQPRGPKGPKGKASAAANGNGSGAGNGSSVAERTGLTE
WSIGTLEKQVQRLVAGHTVTGYPALVDEGSTAGVRIFQSAGEQQAAMRAGVIRLLVLRVP
SPAKYVLEHLSNTEKLTFSQNPHGSVAALIEDCTLAAVDKLTPEQLPWTRAEFDALYETV
RAELIDTVFSVTAIVEKILASTRRISKALKGTTSLALISALNDIRAQLDALVYPGFVART
GYAQLMHLPRYLAGIERRLEKLPGNVQRDGLSMAVIHRLEDEYDDAVAALAPGRGTPPEL
AEVRWMIEELRISFFAQELGTARTVSEKRIRTALNSALAPA
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atggcactgacaatttcctatcccgaacagctgcccgtttccgagcgccgcgaagacatc
atggcagcgattgccgccaaccaggtcaccgtcatcgccggcgaaaccggctccggaaaa
accacgcagattccgaagatgtgcctggaactcggtctggccgaaaacgggctgatcggg
cacacccagccccggcgcctggccgcgcgcaccgtggccgagcggatcgcctccgagctc
gacgtcgaactcggcgaggaagtgggcttccaggtccgctttaccggggaaaccggccgg
aagacgaaggtcaagctgatgaccgacggcatcctgctggcggaaatccggcacgatccg
atgctgaagaaatacagcaccatcatcattgacgaggcccacgagcgcagcctgaacatc
gacttcatcctcgggtacctgcgccggctgctgccgacgcgcccggacctgaaggtcatc
atcacttcggcgaccatcgatccgcagcggttcgccgagcacttcgccctcaacggcact
ccggcccccatcatcgaggtgtccggccggaccttcccggtggagatccgctaccgtccg
ctgaaccagccggccgacggcggcagcgacgaagagggcatcgaggacgagctcgaagag
gaccgggacccggtggacgccgtctgcgacgccgtcgacgagctctcccgcgaggcaccc
ggcgacgtcctcgtgttcttctccggcgaacgggaaatccgcgacgccgccgacgcactg
cgttcctccgtctcccgcaacccgcggctggccaacaccgagatcctgccgctgttcgcc
cggctctcccttgccgaacaacacaaggtcttctcccccggccgcaaccggcggatcatc
ctcgccaccaacgtggccgagacctccctgaccgtccccggcatcaagtacgtcattgat
accggtacggcccgcatctcgcgctattcgcaccggaccaaggtccagcggctgcccatt
gagcggatctcccaggcttcggccaaccagcgttcgggacgctgcggccgtgtctccgac
ggcatcgcgatccggctgtactcggcggaggacttcgagtcccggccggaattcaccgat
cccgaaatcctgcgcaccaatctggccgccgtgatcctgcagatggcggccatgggcgtg
gccaagggacccaaggacgtcgcggatttcccgttcgtccagcccccggattccaaggca
atcaacgacggcgccgtgctgctgcgcgaactcggtgccctgcatccccagggcggtatc
accgaggtgggccggaagctctcccagctgccggtggacccccggctgggccggatgatc
gtcgaagcgggcaaccgcggctgcaccaaggaagtcatggtgctcacggccgccctgacc
atccaggatccgcgcgaacgcccctccaaggacgatccggcccgggcccagaaggccgcg
gaaatgcacaagcggttcgtggacgagaactcggatttcaccgggtacctgaacctgtgg
cgctatgtggaggaaaagcagaaggaactatcctcctcggccttccgaaggatgtgcaaa
aacgagttcctgaacttcctgcgcatccgcgaatggcaggacctgtttgcccagctgcgc
cagctggccaagccgctggggatcacgcttgcccccgagccggtggaccccgtgggcaag
taccgggaaatccacatgtccctgctggccggactgctcagccacatcggcctctacgac
cagcgcaagcgtgaatacaccggagcccgcggtacacgcttcgcggtcttccccggctcg
gccctgttcaagaagtccccggactgggtgatggctgccgagctggtggaaacctcccgc
ctgtgggcgcgggtggcggcgaagttcgatccgctctgggtggaggacgtcgccggccat
ctggtgaagcgcacctacagcgaaccgcactggtccaagagccgcggggccgtgatggcc
tatgagaaagtcaccctctacggcgttccggtggtgccgcagcgcagcatcaactacggc
cgcatcgaccccgtgctgtcccgcgaaatgttcatccggcatgccctggtggagggcgac
tggcgtacccaccataagttcttccaccgcaaccaggccctgctggccgaggttgaggag
ctggagaaccgggtccgccgccgcgggctgcgcgtggatgacgaaaccctcttcgagttc
tacgacgagcgggtgggcgccgacgttgtctccgaacgccacttcgacaagtggtggaag
catgcccggcacgaggatccggcactgctggacttcgatccggacgcgctgcgcaccgac
gacgccgagggactcgacgagaaggacttcccgaagtccttcttctacggttccttcgag
ctgccgctgacctacgagttcactcccggcgtgcccactgccaacgacggcgtcacggtg
gaagtgccggtattgttcctgaaccagctcacccccggtccgtttgcctggcagatcccg
ggcctgcgcgccgagctcattacggccctgatcaagtccctgcccaaggcgatccggaag
aacttcgttccggcgcccgacgtcgcccgctcggcggccgcggcactggccgctgatttc
gacccggcctcggacgagctggagccgtccctggaactggtcctgcgccggctgaaggga
tcgatcatcccgcccggttcctggaactgggatgccgtcccggaccacctccggatgacg
ttcaccgtggtggattcctccggccgggtgctggacgagggcaaggacctcgccgcactg
caggagtccctcgctccggccacgcgccgggccatcgcggaatcccttggcgccacaccg
tccactgtgcagccgcgcggacccaagggccccaagggcaaggcctcggctgccgccaac
ggcaacggttccggcgccggcaacggttcctccgtggcggaacggaccgggctgaccgag
tggagcatcggcaccctggagaagcaggtgcagcggctggtggccgggcatacggtgacc
ggatacccggcgctggtggacgagggcagcaccgcgggcgtgcggatcttccagagcgcc
ggcgagcagcaggccgccatgcgtgccggtgtcatccggctgttggtgctgcgtgtgccc
agcccggcgaagtatgtgctggaacacctgagcaacaccgagaagctgaccttcagccag
aacccgcacggaagtgtggctgcgctgatcgaggactgcaccctggccgcggtggacaag
ctcacgccggagcagctcccgtggacgcgggccgagttcgacgccctgtatgaaaccgtg
cgggccgaactgatcgacaccgtcttcagcgtcaccgcgatcgtggagaagatcctggcc
agcacccggcggatcagcaaggccctgaagggcaccacgtcgctggccctgatcagtgcc
ctgaatgacatccgggcgcagctcgacgccctggtgtatcccgggttcgtggcccgcacg
ggctacgcgcagctgatgcacctgccccggtacctggccggcattgaacgccgcctggag
aaactgccgggcaacgtgcagcgggacgggctgtccatggccgtcatccaccgtctcgag
gacgagtacgacgacgccgtggcggcgctggcgcccgggcgcggcactccccccgaactg
gcggaggtccgctggatgatcgaggagctgcggatcagcttctttgcgcaggaactggga
acggcccggaccgtttcggagaaacggatccggaccgccctgaactcggcgctggctccg
gcctaa
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