Azospirillum thermophilum: DEW08_12240
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Entry
DEW08_12240 CDS
T05917
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
azz
Azospirillum thermophilum
Pathway
azz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
azz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DEW08_12240 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
azz03400
]
DEW08_12240 (mfd)
Enzymes [BR:
azz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DEW08_12240 (mfd)
DNA repair and recombination proteins [BR:
azz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DEW08_12240 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
Cas3-like_C_2
MFD_D3
UB2H
AAA_16
SecA_DEAD
AAA_22
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AWK86895
UniProt:
A0A2S2CR44
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All DBs
Position
2:1273899..1277537
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AA seq
1212 aa
AA seq
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MVSFDLQPGRPARLLVGGAPEGQDARILAELARKAGGAGLLHVALDDTRAALLAEALAFF
APGLEVATFPAWDCLPYDRVSPNGEIVARRIDTLTRLLARQTGDGKAAPAPLVVLTTVNA
LVQKVPPREAFRNATFSARLRDRIDLNRLQRFLADNGYTRAQTVREPGEYAVRGGIVDLF
PPGTDEPLRLDLFGDELEGVRAFDPMSQRTTDKRDGIELKPMSEVFLDEAGIARFRSGYR
ELFGAVTDDDPLYEAISAGRKYGGMEHWLPLFHERMDSLLDYLPKAIVSLDHQAAESRDA
RLAQVADFHAARAEMMSVEKRAGNPVYKPVPTSSLFLDADGWDAAFRVRAVAQLQPFATP
PGIMGTVDAGGRRGHDFAEERARPDVNVFDAVKDHIRALRADGRRVLVAGYSAGSRDRLM
SVLSDHGIEGLEPAGTIEEVRRFDRGITGMVVLGMEHGFAAPDLAVITEQDILGDRLVRP
AKKKRKAANFIAEHSALNEGDLVVHMDHGIGRYDGLETLEVTGAPHDCLRIIYEGGDKLY
VPVENIEVLSRYGSEDAGVQLDKLGGAGWQGRKARVKKRLKDMAEALLKIAAERMLKKAE
PVHTPEGLYEEFAARFPYPETDDQLKAIEDIFTDLASGRPMDRLVCGDVGFGKTEVALRA
AFMVAMSGQQVAVVVPTTLLARQHFRTFSTRFAGLPLRVVQLSRMVTAREQTLVKKELAE
GTADIVVGTHALLAKGLEFKRLGMVIVDEEQHFGVKQKERLKELRSDIHVLTLTATPIPR
TLQMALSGVRELSLIATPPVDRLAVRTFVLPYDPVVIREAILREHYRGGQTFYVCPRIED
LAKVAERVRELVPEVKLVTAHGQMAASELEEVMTAFDEGKFEVLLATNIIESGLDIPNAN
TLIVHRADLFGLAQLYQIRGRVGRSKKRGYAYLTYAANKPLTGTAQQRLHVIETLDSLGA
GFQLASHDMDIRGAGNLLGEEQSGHVKEVGVELYQHMLEEAVATARASMDGQVPAGASAQ
DWVPQINLGTPVLIPESYVADLNVRLTLYRRIADLVDRSEVESFAAELIDRFGKLPEEVE
NLLDVVTIKKLCRQGCVERVDAGPKGAVLTFHENSYPEPAKLLTYISQHMGLMKLRPDHK
LVYTREWTDTHQRVRSVQRLVKDLAEMASGGGVPKGETPPPPPPPPPPRPTALKAGSKFG
RNIPGRPFPGRR
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
gtggtcagtttcgatcttcagcccggccgtcccgcccggctgctcgtcggcggcgcgccg
gaagggcaggacgcccgcatccttgccgagcttgcccggaaggccggcggggccgggctg
ctgcatgtggcgctcgacgacacccgtgccgccctgctggcggaggcgctggccttcttc
gcgccggggctggaggtggcgaccttcccggcctgggactgcctgccctatgaccgggta
tcgcccaacggcgagatcgtggcgcggcgcatcgacacgctgacccgcctgctcgcccgc
cagaccggcgacggcaaggcggcgccggccccgctggtggtgctgacgacggtcaacgcc
ctggtgcagaaggtgccgccgcgcgaggccttccgcaatgcgaccttctcggcccgcctg
cgcgaccggatcgacctgaaccggctgcagcgattcctcgccgacaacggctacacccgc
gcccagacggtgcgggagccgggcgaatatgcggtgcgcggcggcatcgtcgatctgttc
ccgccggggaccgacgagccgctgcgcctcgacctgttcggcgacgagctggagggggtg
cgcgccttcgacccgatgagccagcgcaccaccgacaagcgcgacggcatcgagctgaag
ccgatgtcggaggtcttcctggacgaggccggcatcgcccgcttccgctccggctaccgc
gagctgttcggcgccgtcaccgacgacgacccgctctacgaggcgatcagcgccggccgc
aagtatggcggcatggagcactggcttccgttgttccacgagcggatggacagcctgctc
gactatctcccgaaggcgatcgtctcgctcgaccatcaggcggcggaatcgcgcgacgcc
cggctggcgcaggtggcggatttccatgccgcgcgggcggagatgatgtcggtcgagaag
cgcgccggcaatccggtctacaagccggtgccgacgtcctccctcttcctcgacgccgac
ggctgggacgccgccttcagggtgcgggcggtggcgcagctccagcccttcgccacgccg
ccggggatcatgggcacggtggatgccggcgggcgccgcggccacgacttcgcggaggag
cgggcgcggccggacgtcaacgtcttcgacgcggtgaaggaccatatccgggcgttgcgc
gccgatggccggcgggtgctggtggcaggctattccgccggctcgcgcgaccgtctgatg
agcgtgctctccgaccacgggatcgaggggctggagccggccgggaccatcgaggaggtc
cggcgcttcgaccgcgggattaccggcatggtcgtgctgggcatggagcacggcttcgcc
gcccccgacctcgccgtcatcaccgagcaggacatcctgggcgaccgcctcgtccgcccg
gccaagaagaagcgcaaggcggccaacttcatcgccgagcattcggcgctgaacgaaggc
gacctcgtcgtccacatggaccacggcatcggccgctatgacgggctggagacgctggag
gtcaccggcgcgccgcacgactgcctgcgcatcatctacgagggcggcgacaagctctac
gtcccggtcgagaacatcgaggtgctgtcgcgctacggctccgaggatgccggcgtgcag
ctcgacaagctgggcggggccggctggcagggacgcaaggcgcgcgtcaagaagcgcctg
aaggacatggccgaggcgctgctgaagatcgccgccgagcgcatgctgaagaaggccgag
ccggtccacacgccggaggggctgtacgaggagttcgccgcgcgcttcccctatcccgag
accgacgaccagctcaaggcgatcgaggacatcttcaccgatctggccagcggccggccg
atggaccggctggtctgcggcgacgtcggcttcggcaagacggaggtggcgctgcgcgcc
gccttcatggtggcgatgtcggggcagcaggtggcggtcgtcgttccgaccacgctgctg
gcgcgccagcatttccgcaccttctccacccgcttcgccgggctgccgctgcgcgtcgtc
cagctctcccgcatggtcaccgcgcgcgagcagacgctggtcaagaaggagctggcggag
ggcaccgccgacatcgtggtcggcacccacgcgctgctcgccaaggggctggagttcaag
cgcctcggcatggtcatcgtcgacgaggagcagcatttcggcgtcaagcagaaggagcgg
ctgaaggagctgcgctccgacatccatgtcctgacgctgaccgccaccccgatcccgcgc
acgctgcagatggcgctgtccggcgtgcgcgagctgtcgctgatcgccaccccgccggtc
gaccggctggcggtccgcaccttcgtgctgccctacgacccggtggtgatccgcgaggcg
atcctgcgcgagcattaccgcggcggccagaccttctacgtctgcccgcgcatcgaggat
ctggccaaggtggccgaacgggtgcgcgagctggtgccggaggtcaagctggtcaccgcc
cacggccagatggcggcgagcgagctggaagaggtgatgaccgccttcgacgagggtaag
ttcgaggtgctgctggcgaccaacatcatcgaaagcggcctcgacatccccaacgccaac
acgctgatcgtccatcgcgccgacctgttcggtctggcgcagctctaccagatccgcggg
cgcgtcggccggtcgaagaagcgcggctatgcctacctgacctatgccgccaacaagccg
ctgaccggcacggcgcagcagcgcctgcacgtcatcgagacgctggacagcctgggcgcc
ggcttccagctcgccagccacgacatggacatccgcggcgccggcaacctgctgggcgag
gagcagtcgggccacgtcaaggaggtcggcgtcgagctctaccagcatatgctggaggag
gcggtggcgaccgcccgcgcctcgatggacgggcaggtgccggcaggcgcgtcggcgcag
gactgggtgccgcagatcaacctcggcacgccggtgctgatccccgagagctacgtcgcc
gacctcaacgtccgcctgaccctctaccgccgcatcgccgatctggtggaccgcagcgag
gtcgagtccttcgcggccgagctgatcgaccgcttcggcaagctgccggaggaggtcgag
aacctgctggacgtcgtcaccatcaagaagctgtgcaggcagggctgcgtcgagcgggtg
gacgccggaccgaagggtgcggtgctgaccttccatgagaacagctatccggagccggcg
aagctgctgacctacatcagccagcacatgggcctgatgaagctgcggcccgaccacaag
ctggtctacacccgcgaatggaccgacacccaccagcgggtgcgcagcgtgcagcggctg
gtcaaggatctggcggagatggcgagcggcggcggcgtgccgaagggcgagacgcccccg
ccgcccccgccaccgccgccaccccgtccgacggcgctgaaggccggatcgaagttcggc
cgcaacatccccggccggcctttcccgggccggcgatga
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