Brucella abortus A13334: BAA13334_II01263
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Entry
BAA13334_II01263 CDS
T01704
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
baa
Brucella abortus A13334
Pathway
baa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
baa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BAA13334_II01263
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
baa03400
]
BAA13334_II01263
Enzymes [BR:
baa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BAA13334_II01263
DNA repair and recombination proteins [BR:
baa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BAA13334_II01263
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
RecG_dom3_C
AAA_22
NitrOD2
Motif
Other DBs
NCBI-ProteinID:
AEW19345
LinkDB
All DBs
Position
2:806035..809547
Genome browser
AA seq
1170 aa
AA seq
DB search
MPVFSKLGLKPGAIANKGRHIVIDGVADGFEAFCLARLVEEIGERGPIMYIVRDGQRIAD
LEQVLGFVSPDLPVLHLPAWDCLPYDRVSPGADAAARRLAALSALCALKKAPHPAVILTT
SNAVLQKLPPQAALGEQVISARPGNQLDMNDLAARLERNGFERVSTVRDIGEYAVRGGIL
DLYAPGAEEPLRLDFFGDTLETIRAFDPASQRTTGTRKEFVLQPMSEITLSSDMISRFRK
NYVAMFGAPQRDDALYQAISEGRRFAGMEHWLPLFYDNLETVFDHAGPMPVVFDHLVHEA
LTERHTMVVDHYEARLRQAEGKEAGSDAVPYKPVKPEMLYLTPGQVEEAAEAAGLRIDLT
PFGAPEVSGRTIIHADVHKGRSFAEERAATDVNLFEAVVKHIADLRASGKKVLVAAWTEG
SLDRLCQVLDEHGLEKIETVDRLSTVKALSRDKVTAAVLAVESGFDAGDLVVVAEQDILG
DRLIRRSRRRKRDQDFISEVASLTAGDIVVHVDHGIGRFIGLKTITAAGAPHDCLEIHYA
GDDRLFLPVENIELLSRYGSEGSDAVLDKLGGGAWQARKAKLKKRLLEIAGHLIQIAAER
QMRGAPVMTPPDGLYAEFAARFPYDETDDQLTAIEAVADDLAQGKPMDRLICGDVGFGKT
EVALRAAFIAAMSGVQVAVVVPTTLLSRQHFKTFSNRFHGLPINVAHASRLVGAKGLAAT
KKGLEEGTVDIVVGTHALLGSSIKFKNLGLLIIDEEQHFGVKHKERLKELKSDVHVLTLS
ATPIPRTLQLALTGVRELSLITTPPVDRMAVRTFVSPFDPLVIRETLLRERYRGGQSFYV
VPRIADLTDIEEFLKEHVPELKVAVAHGQMAPGVLDDIMNAFYDGQYDVLLSTTIVESGL
DIPTANTMIVHRADMFGLAQLYQLRGRVGRSKQRAFALFTLPAGKMLTQMAERRLKVLQS
LDTLGAGFQLASHDMDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVATLKGSGEVEDS
QWSPQIAIGTAVMIPEAYVPDLQLRLGLYRRLADLEEPQDIDAFGAELIDRFGPMPDEVQ
HLLKIVYIKALCRRANVEKLDAGPKGVVIQFRHATFNNPVGLVKMIGEQGSMAKIRPDQS
IVFIRDWPTPEKRLNGSAVIMTQLAKIAAA
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atgcccgttttcagcaaactcggtctcaagcccggcgcgatcgcgaataaggggcgccat
atcgtcattgacggtgttgcggacggttttgaggcgttctgccttgcgcgtctggtggaa
gagatcggggagcgcgggccgatcatgtatatcgtgcgcgacgggcagcgcattgccgat
ctggagcaggtgttgggtttcgtttcgcccgatctgccggtgctgcacctgcccgcctgg
gattgcctgccttatgaccgcgtgtcgccaggggcggatgctgcagcgcgcagacttgcg
gcgctcagcgcgctttgcgcactgaagaaagcaccgcatccagccgtcattctcaccacg
tccaatgccgtgctgcaaaaattgccgccgcaggccgcacttggcgaacaggtgatctca
gcgcgccccggcaaccagctcgacatgaacgatcttgccgcacggctggagcgcaacggc
tttgagcgtgtctctaccgtgcgcgacatcggcgaatatgcggtacgcggcggcattctc
gatctttatgcgccgggagcggaagaaccgctgcggcttgattttttcggcgatacgctg
gaaacgatccgtgccttcgatcccgcctcccagcgcaccaccggcacccgaaaggaattc
gtgcttcagccgatgagcgaaatcacgctctcgtccgacatgataagccggtttcgcaag
aattatgtggccatgttcggcgcgccgcagcgtgacgatgcgctttatcaggccatcagc
gaaggccgccgttttgctggcatggaacattggctgccgcttttctatgacaatctggag
acagttttcgaccatgccgggccaatgccggtcgtgttcgaccatctggtgcatgaggcg
ctgaccgagcgccacaccatggttgtggaccattacgaagcgcgactgcggcaggcggag
ggcaaagaggcgggcagcgatgccgtgccttacaagccggtaaagccggaaatgctctat
cttacgccgggccaggttgaagaagccgccgaggccgctggcctgcgtattgaccttacg
ccattcggcgcgccggaggtttccggccggaccattattcatgccgatgtgcacaagggc
cgcagctttgccgaggagcgcgccgcaaccgacgtgaacctgtttgaagccgtggtgaaa
catattgcagacctgcgcgcctccggcaaaaaggttctggttgccgcctggaccgaaggt
tcgctcgaccggctctgtcaggttctggacgaacacgggcttgaaaaaatagagaccgtc
gataggctttccaccgtcaaggccctgtcgcgcgacaaggtgacggcggcggtgctggcg
gtcgaaagcggcttcgatgcgggcgatctggtggtcgtggcggagcaggatattctgggc
gacaggctcatccgccgctccaggcgccgcaagcgcgatcaggatttcatctcggaagtc
gcctcgctgacggctggcgatatcgtcgtccatgtcgatcacggcattgggcgctttatc
ggcctcaagacgattactgcggcaggcgccccgcatgactgccttgaaatccattatgcg
ggcgatgaccgcctgtttctgccggttgagaatatcgagcttctgtcgcgctatggctcg
gaagggtccgatgcggttctcgacaagctgggcggtggcgcatggcaggcgcgcaaggca
aaactcaagaaacggcttctggaaattgccggccatctgatccagattgccgccgaacgc
cagatgcgcggtgcgcctgtgatgacgccgccggacggtctttatgcggaatttgccgcg
cgctttccctatgatgagactgacgaccagttgacggcaatcgaggccgtggcggatgat
cttgcgcaaggcaagccgatggatcgcctcatctgcggcgatgtcgggttcggcaagacg
gaagtggcgctgcgcgccgccttcatcgccgcgatgagcggcgttcaggtggcagtggtc
gtgccgaccacgcttctttcgcgccagcatttcaagaccttctccaaccgctttcacggc
ctgccgatcaatgtggcccacgcctcacgcctcgtcggcgcgaaggggctggccgccacc
aaaaaggggctggaagagggaacggtcgatattgtcgtcggcacacacgcgcttttgggc
agctccatcaagttcaagaatctcggccttctcattatcgatgaggagcagcatttcggt
gtgaagcacaaggaacggctgaaggaactgaaatccgacgtccatgtgctgaccctttcg
gccacgccgatcccgcgcaccctgcaacttgcgctgaccggcgtgcgtgaactttcgctc
atcaccacgccgccggtggaccgcatggcggtgcgcaccttcgtctcgccattcgatccg
ctcgtgatccgcgaaacccttttgcgtgaacgctatcgcggcggccagagcttctatgtc
gtcccacgcatagccgacctcacggatattgaagaattcctgaaggagcatgtgccggaa
ctgaaagtggccgtggcccatggccagatggcgccgggtgtgctggatgacatcatgaat
gccttctatgacgggcagtatgatgtgcttctttccacaaccatcgtggaatcgggcctc
gatattccaaccgccaacaccatgatcgtgcatcgtgccgatatgttcgggctggcgcaa
ctctatcagttgcgcggccgcgtgggccgctccaagcagcgcgctttcgcgctgttcacg
ctcccggcgggcaagatgctgacgcagatggccgaacgccgtctgaaagtgctgcaatcg
ctcgacacgcttggcgcgggcttccagcttgcaagccacgacatggatattcgcggcgca
ggcaatctgctgggcgaggaacagtcgggccacatcaaggaagtgggcttcgagctttac
cagcaaatgcttgaagaagcggttgcgacgctgaagggctccggcgaagtggaagacagc
cagtggtcgccgcagatcgccattggtacggcggtcatgatcccggaagcctatgtgccc
gacctgcaattgcgccttggcctttatcgccgtctggccgatctggaagagccgcaggat
atcgatgcctttggtgcggaactcatcgaccgtttcggcccgatgcccgacgaagtgcag
catcttctcaagatcgtctatatcaaggcgctctgccgccgcgccaatgttgagaaactc
gatgccgggccgaagggcgtggttatccagttccgccacgcgaccttcaacaatccggtc
ggtctggtaaaaatgatcggcgagcaggggtccatggcgaagatcaggccggaccagagc
atcgtcttcatccgcgattggccgacaccggaaaagcgcctcaacggctccgccgtcatc
atgacacagcttgcaaagattgcggcggcctga
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