Bacillus sp. ABP14: BGI23_08195
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Entry
BGI23_08195 CDS
T11093
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
baap Bacillus sp. ABP14
Pathway
baap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
baap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BGI23_08195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
baap03019
]
BGI23_08195
Messenger RNA biogenesis [BR:
baap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BGI23_08195
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Raco_middle
Motif
Other DBs
NCBI-ProteinID:
AOY15162
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Position
1560610..1562283
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AA seq
557 aa
AA seq
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MKSLKNNLSIVALGGVNEIGKNMYVIQFENDIVVIDCGSKFPDESLLGIDLIIPDVTYLQ
ENKEKIRGLVVTHGHEDHIGGIPYFLKQLNVPIYATKLTLGLIEIKLKEHNLQDDTELIV
IHSESEIDFGAIKTTFFKTNHSIPDCLGIVFHTPEGTIVHTGDFKFDLTPVNNQHPDIHK
MAKIGSEGVLALLSESTNAERPGFTPSERSVGERIEEIFMKANRKVIISTFASNVNRVQQ
IVEACIKTNRKLALLGRSMVNVVEVALEKGYLNIPDGMLIEANEVNNLDPKQVAILCTGS
QGEPMAALARLASGNYRQVDVLPEDTVIIAATPIPGNERNVSRIIDNLFALGARVIYGSG
SSTGVHVSGHAYQEELKLMLTLMKPKYFIPIHGEFRMLHHHSLLAESIGVEKENIFIVRN
GDVVDISNQVAIQSRKIQAGNIYVDGLGIGDVGNALLRDRKQLSEDGMLVLVITFNKVDG
EIISGPDIISRGFVYVRDSEEFLKELNKLAVITINNVKKEKVNSWGILKREVREALGKYI
YTSTKRKPMILPIIIEV
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
ttgaagtcattaaaaaataacttgtctatcgttgctttaggtggagtaaatgaaataggg
aaaaatatgtatgttattcaatttgaaaatgatattgtcgttattgactgtggatcaaaa
tttccagatgaaagtttattaggaattgatttaatcattccagatgtcacctacttacaa
gaaaataaagaaaaaattcgcggattagtcgtgacgcatggacatgaagaccatattggg
ggaataccatattttttaaaacaactaaacgtaccaatctatgctacgaagttaacgtta
ggtttaattgaaattaaattaaaggaacataaccttcaagatgatacagaattaatcgtt
attcattcagaatcagaaattgatttcggtgctattaagacaactttctttaaaacgaat
catagcattccagattgcctcggtattgtttttcatacaccagaaggtactatagtacat
acaggtgattttaaatttgatttaacaccagttaataatcaacatcctgatattcacaaa
atggctaaaataggtagtgaaggtgtattagctttactatctgaaagtacaaatgcagaa
cgacctggatttaccccatcagaaaggtcggtaggggaacggatagaggaaatatttatg
aaagcaaataggaaagtgattatttctacttttgcttctaatgtgaatcgtgttcagcaa
atagttgaagcttgtataaaaacaaatcgaaaactggctttgctcggcagaagtatggta
aatgtagtagaagttgctctagagaaagggtatctaaatattccagatggtatgctaatt
gaagcaaatgaggtaaataatttagatccaaagcaggtcgcaatactttgtacaggaagt
caaggagaaccaatggcagctttagcgcgtttagctagtggaaactataggcaagtagat
gttttaccagaagatacagttattatagctgcgactcctattccaggaaatgaacgtaat
gtttcgcgaattatcgataacttatttgcattaggggcaagagtgatttacggatcaggc
agttctactggagtccatgtatctggccatgcatatcaagaagaattgaagttaatgctc
acattaatgaagccaaaatattttatccccattcatggagagtttagaatgctacatcac
catagcttgctagcggaatcaattggtgtcgaaaaagaaaatatctttatcgttcgtaat
ggagatgttgtagatataagtaatcaagtggcaattcaatcgagaaaaatacaagcagga
aatatatatgtagatggattaggaattggtgatgttggaaatgcattattacgtgatcga
aaacaactttcagaagatggaatgctcgttttagttattacttttaataaagtggatgga
gaaataatttcaggtcctgatattatttctcgtggattcgtctatgttcgtgattcagaa
gaatttttgaaggaattaaataaattagctgttattacgattaataatgtaaagaaagag
aaagtgaatagctggggtattttgaaaagagaagtaagagaagctttagggaagtatata
tatacgagtacgaaaagaaaaccgatgattcttcctataattatagaggtgtaa
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