Bacillus sp. ABP14: BGI23_18160
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Entry
BGI23_18160 CDS
T11093
Name
(GenBank) Zn-dependent hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
baap Bacillus sp. ABP14
Pathway
baap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
baap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BGI23_18160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
baap03019
]
BGI23_18160
Messenger RNA biogenesis [BR:
baap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BGI23_18160
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
PDEase_II
Motif
Other DBs
NCBI-ProteinID:
AOY17093
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Position
complement(3521612..3523282)
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AA seq
556 aa
AA seq
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MKRKENESVKVFALGGVGEIGKNMYCVEIDSEIFIVDAGLMFPGDEMFGIDIVIPDITYL
VENQERVKGLFITHGHEDHIGGIVYVLRKLSIPVYATKLTVGLIQEKLGEAGMLGRVDLK
TIDSNSTVEFNTTTVSFFGTTHSIPDSVGVCFHTSKGAIVYTGDFKFDQTPIGNSGADLG
KMAQIGNEGVLCLLSDSTNAERPGYTGSEKEVGVEISKVFYGAEGRIIVASFASNVHRIQ
QVFDAAAETGRKVAVVGRSMVKVVDIARRLGYLDVPEGMVISLQEVDNFPEKKVAILTTG
SQGEPMAALSRMAKQAHKQISIRKGDTVIIAASPIPGNEISVSKIIDLLFRAGAEVVYYG
ERKVHVSGHGSQEELKLMLNLMKPKYFVPVHGEFRMQKAHAYLAEDVGIARENIFIVEKG
DVIGFGDDEANLVGKVQAGNVLIDGLGVGDVGNIVLRDRKMLSQDGILVVVVTLGKDEKK
IISGPEIISRGFVYVRESEALIDRSTEIVRMIVEQSIKEYSIEWSMLKQNIRELLGQFLY
EETKRKPMILPIIMEV
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgaagagaaaagagaatgagtctgttaaagtatttgctcttggtggagtaggtgaaatc
gggaaaaacatgtactgtgttgaaattgattctgaaatctttattgtagatgcagggtta
atgttcccgggagatgaaatgtttggaattgatatcgttattcctgatattacatattta
gtagaaaaccaagagcgagtaaaaggtttatttattactcacggtcatgaagatcatatt
ggtggcattgtttacgtacttcgtaaattatcaattccagtgtatgcaacgaaattaacg
gtaggacttatacaagaaaaacttggcgaagcgggtatgttaggccgtgtagatttaaaa
acaatcgattcaaattcaacagtagagtttaatactacaacggtgtcattctttggaacg
acacatagtattccagattctgttggtgtttgtttccatacatcaaaaggtgcgatcgta
tatacgggagactttaaatttgatcaaactccaattggaaatagtggagcagaccttggg
aaaatggctcaaatcggaaatgaaggcgttctatgcttattatctgatagtacaaatgct
gagcgtccaggctatacaggttctgaaaaagaagttggtgtagaaatttctaaagtgttc
tacggcgcagaaggacgtattatcgttgcttcatttgcatcgaatgtacatcgtattcaa
caagtatttgatgcagctgctgaaacaggacgaaaagtagcggttgtaggacgtagtatg
gtgaaagtggtagatatcgcaagacgtcttggttatttagatgttccagaaggtatggtt
atttcactacaagaagtagacaatttcccagagaaaaaggtagctattttaacgacaggt
agccaaggtgaaccgatggcagccctttctagaatggcaaagcaagctcataaacaaatt
tcaattcgtaaaggtgatacggttattatcgcggcatctccaattccaggtaatgaaata
tctgtatcgaaaattattgatttgttatttagagcgggagctgaagttgtttattacggt
gaaagaaaagttcacgtttccggtcatgggagccaagaagaattaaaattaatgttaaat
ttaatgaaaccgaaatattttgtacccgtacatggtgagttccgtatgcaaaaagcacat
gcatacttagctgaagatgtaggtattgcaagagaaaatatctttattgtagaaaaaggc
gatgtaattggttttggtgacgatgaagcgaacttagttggcaaagtgcaagctggcaat
gtgttaattgatggattaggtgtaggtgacgttggtaatatcgttcttcgagatagaaaa
atgttatctcaagatggaatattagtagttgttgtaacactgggtaaagatgaaaagaaa
attatctctggtccagaaatcatttcacgtggatttgtatatgtacgtgaatcagaagcg
ttaattgaccgttctacagagattgtacgtatgattgttgagcaatcaattaaagaatat
tcaattgaatggtctatgttaaaacaaaatattcgtgaattattaggacagttcttgtac
gaagagacgaagagaaaacctatgattttaccgattattatggaagtataa
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