Bacillus sp. ABP14: BGI23_19075
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Entry
BGI23_19075 CDS
T11093
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
baap Bacillus sp. ABP14
Pathway
baap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
baap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BGI23_19075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
baap03019
]
BGI23_19075
Messenger RNA biogenesis [BR:
baap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BGI23_19075
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
DUF4453
Motif
Other DBs
NCBI-ProteinID:
AOY17275
LinkDB
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Position
3703870..3705537
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AA seq
555 aa
AA seq
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MKFLKNDQAAVFALGGLGEIGKNTYAVQFQDEIIIIDAGIKFPEDELLGIDYVIPDYTYF
VRNEDKIKGLFITHGHEDHIGGIPYLLRQVNIPIYGGKLAIALIKNKLEEHGLLRKAKLY
EIQEDDVIKFKKTSVSFFRTTHSIPDSYGVVVKTPQGQVVHTGDFKFDFTPVGEPADLTK
MAEIGKDGVLCLLSDSTNSEVPNFTMSERRVGDSIQDIFRKVEGRIIFATFASNIHRLQQ
VVEAAVENNRKVAVFGRSMEAAIEIGQNLGYIRCPKDTFIDASQLNRLPANKVVILCTGS
QGEPMAALSRIANGTHRQIQIIPGDTVVFSSSPIPGNTISVSRTINMLYRAGADVIHGKL
SNIHTSGHGGQEEQKLMLRLIKPKYFMPIHGEYRMQRMHMKLANDCGIPEENCFIMDNGD
VLALRSDEASVAGKIPSGSVYIDGNGIGDIGNIVLRDRRILSEEGLVIVVVSIDMKEFKV
AAGPDIISRGFVYMRESSDLINDAQTLITTHLEKVMERKTTQWSEIKNEITDTLAPFLYE
KTKRRPMILPIIMEI
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttctaaagaatgatcaagcagccgtttttgctttaggtggtcttggtgaaatc
ggtaaaaatacatatgctgttcaatttcaagatgaaattattataattgacgctggaatt
aagtttccagaagacgaactcctcggaatcgattatgtaataccagattacacttatttt
gtgcgaaacgaagataaaattaaagggctattcattacacatggtcacgaagatcatatc
ggtggaattccttacttattacgtcaagtaaacattccgatttatggcggaaaattagca
attgcactaattaaaaacaaattagaagagcacggattacttcgtaaagccaagctttat
gaaattcaagaagatgatgttattaaatttaaaaagacatcagtttccttcttccgtaca
actcacagtatcccagattcatacggagttgttgtgaaaacacctcaaggacaagtggtt
catactggagatttcaaatttgacttcacaccggttggtgaaccagcggacttaacaaaa
atggctgaaataggaaaagacggtgtactttgtctcttatctgacagtacaaacagtgaa
gttccaaactttacaatgtctgagcgccgtgttggtgatagtattcaagatattttccgc
aaagtagagggtcgtattatcttcgcaacctttgcatcaaatatccatcgcttgcaacaa
gtcgttgaagcggctgttgaaaacaatcgtaaagtggctgtatttggccgaagtatggag
gcagcgattgaaatcggacaaaacctcggttatattcgctgtccgaaagatacattcata
gatgcatctcaattaaatcgtctaccggctaataaagttgttattttatgtacaggtagt
caaggggagccaatggcagcactttcacgtattgctaatggtacccatcgtcaaattcaa
attattcctggcgacacagttgtgttctcttcttcaccaatccctggtaatacaattagt
gtaagccgtacaattaatatgttgtaccgtgctggtgccgatgtaatccacggaaaactg
tcaaacattcatacgagtggacacggtggacaagaagaacaaaaactaatgcttcgtcta
attaaaccgaagtatttcatgccaattcatggtgaatatcgtatgcaacgtatgcatatg
aaattagcaaatgattgtggtattccagaagaaaactgtttcattatggataatggtgat
gttcttgccttacgttcagatgaagcaagtgtagctggtaaaataccatctggatctgtt
tatattgacggaaatggtattggagatatcggtaatatcgtattacgcgatcgtcgtatc
ctttctgaagaaggacttgtcattgtcgttgtaagcattgatatgaaagaatttaaagtt
gcagcagggcctgatattatctcacgtggtttcgtttatatgcgcgaaagtagtgattta
attaatgatgctcaaacattaattacaactcatttagaaaaagtaatggaacgtaaaaca
acacaatggtctgaaattaaaaatgaaattacagatacattagcaccattcctatatgag
aaaacgaaacgtcgcccaatgattttaccaatcattatggagatataa
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