Buchnera aphidicola Bp (Baizongia pistaciae): bbp_335
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Entry
bbp_335 CDS
T00111
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bab
Buchnera aphidicola Bp (Baizongia pistaciae)
Pathway
bab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
bbp_335 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bab03019
]
bbp_335 (deaD)
03009 Ribosome biogenesis [BR:
bab03009
]
bbp_335 (deaD)
Enzymes [BR:
bab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
bbp_335 (deaD)
Messenger RNA biogenesis [BR:
bab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
bbp_335 (deaD)
Ribosome biogenesis [BR:
bab03009
]
Prokaryotic type
rRNA helicases
bbp_335 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AAO27056
UniProt:
Q89AF9
LinkDB
All DBs
Position
complement(390346..392154)
Genome browser
AA seq
602 aa
AA seq
DB search
MTHTNMTFSSFGLNSCIITALNDIGYVQPSPIQAACIPYLIKGKDVLGMAQTGSGKTAAF
ALPLLHNIKLDVRVPQILVLTPTRELAVQVAEAFSNFSKKLIGVHVLALYGGQRYDLQLK
SLRKGPQIIVGTPGRLLDHLKRRTLSLSNLHSLVLDEADEMLRMGFIEDVETIMTEIPDR
HQTALFSATMPEAIRRISRRFMKNPKEIRIQSNITTRPDIQQSYWMVYGKKTDALIRFLE
AEDFSATIIFVRTKNATLEVSEVLERYGYNSAALNGDMNQSLREQTLEKLKDGRLDILIA
TDVAARGLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRKGKALLFVENRERRLLRNIE
RAMNISISEVNLPKSDFLSKRRLEKFAQKVQIQLDSKDLHEYRGLLPKLQPNNNSLDIES
LAAALLKMAQGERSLIVKPESIVRARHLKIKDTYRNNNYKSLNYVSRYNRDKNVDLYRID
VGRNDGVEVRHIVGAIANEGDISSRKIGNVRLFSNYSTIELPKGLSNTLPKTFIRTKILN
KFINIKLLYNSNFKGNYNDIKDVKVYNSNKLRSKKMNNKKFVSSGVRKKIKTNISCNRRR
SV
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgactcacactaatatgacattttctagttttggtttaaattcgtgtattattactgca
ttaaatgatataggttatgttcaaccatcacctattcaggctgcttgcattccttacctt
ataaaaggaaaggatgtattaggaatggcacaaacaggaagtggaaaaactgctgctttt
gcgttgccgttattacataacataaaattagatgtaagagttcctcagattttagtatta
accccaactagggaactagctgttcaggtagctgaagctttttctaatttttctaaaaag
ttaataggagttcatgtattagcattatatggagggcaaagatatgatttacaactaaaa
tctttacgtaagggtccacaaattattgttggtactccaggacgtttattagatcattta
aaacgtagaacattaagtttatctaatcttcatagtttagtgttagatgaagctgatgaa
atgttaagaatgggatttattgaagatgtagaaactattatgacagaaattcctgatagg
catcaaacggctttattttctgctactatgccggaagcaatacggagaatttctagaaga
tttatgaaaaatccgaaagaaattcgaatccaatcaaacattactacaagaccagatatt
caacaaagttattggatggtgtatggcaaaaaaactgatgcattaattcgttttttagaa
gctgaagatttttctgctacaataatatttgttcgtactaaaaatgctacattggaagta
tctgaagttttagaacgttatggttataacagtgctgcacttaatggagatatgaatcaa
tctcttagggaacaaacattagaaaaattaaaagatggtagattagatattttaattgct
acggatgttgctgcacgaggattggatgtcgatcgaattagttttgttattaattatgat
attcctatggattctgaatcgtatgtgcataggattgggagaacaggcagagctgggaga
aaaggaaaagcgctgttatttgttgaaaacagagaacgacgtttattgcgtaatattgaa
cgggctatgaatatttctatttcagaagtgaatttgccgaaatcagattttttaagtaaa
cgacggctcgaaaaatttgctcaaaaagttcagatacaattagatagtaaagatttacat
gaatatcgcggtttattgccaaaattacaacctaataataattctttagatattgaatca
ttggcagctgcattattaaagatggcgcaaggtgaaagatctcttatcgtaaaaccagag
tctatagttagagctagacatttaaaaattaaggatacttatcgaaataataattataaa
agtttaaattatgtatcgcgctataatagagataaaaatgtagatttatatcgtattgat
gtaggacgaaatgatggagtagaagttcgtcatattgtgggtgcaattgctaatgaaggt
gatataagtagtcgaaagattggaaacgttcggttattttctaattattcaacaattgaa
ttaccaaaaggtttatctaatactttgcctaagacatttattcgtactaaaattcttaat
aaatttattaatataaaattgttgtataattcaaattttaaaggtaattataatgatatt
aaagatgtaaaggtatataatagtaataaattacgttctaaaaaaatgaataataaaaaa
tttgtttctagtggggtacgaaaaaaaattaagactaatatttcttgtaatcgtcgtaga
agtgtataa
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