Brucella abortus bv. 9 C68: DK53_1038
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Entry
DK53_1038 CDS
T03474
Name
(GenBank) hypothetical protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
babu
Brucella abortus bv. 9 C68
Pathway
babu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
babu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DK53_1038
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
babu03019
]
DK53_1038
Enzymes [BR:
babu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DK53_1038
Messenger RNA biogenesis [BR:
babu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DK53_1038
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA_19
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AIJ59938
LinkDB
All DBs
Position
1:1052237..1053832
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AA seq
531 aa
AA seq
DB search
MGRLIFIGFPGLGLVASHLPHRNGPAEEGTRNQFGHDSASRQRVFRRPVVIIKWNYVRQV
ALARRFKADRECAVPLKEIELTKENTGGFAALGITGVLLKGVEAAGMTEPKPIQTQAIPS
QLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTARALILAPTRELAVQIEQTI
RNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLIATPGRLTDLMRDGLVDLSQTRWLVL
DEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAERLLRDPVRVEVAPQGT
TASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKHGADAVVRHLERDRYDVAAI
HGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGR
TGRNGASGASITLYDPATEESKLRAVERVTRSKLSIKDAPVKLAPAPVAKGPAPQGQRTE
QAESRKAPAHKHRRPAQKAGEQHRAGAHASAGEAAPKPKRPFRSNGGQRAA
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atgggccgactgattttcatcggctttcccggacttggacttgttgcgtcacatcttcca
caccggaatggtccggcagaggaagggacccgaaatcagttcgggcacgacagcgcaagt
cgccagagagttttccggcgtcccgtcgttatcattaaatggaattatgttcggcaagtt
gcgcttgcccggcgttttaaagcggaccgcgaatgcgcggtgccgctgaaagagattgaa
ttgacaaaagaaaacacgggcggcttcgccgctctcggtatcaccggcgttctgctcaaa
ggcgtggaagctgccggcatgaccgagccgaaaccgatccagacgcaagccatcccgtcg
caacttgaaggccaggacatcctcggcatcgcccagacgggttccggcaagacggcggct
ttcagcctgcccatccttcagaaaatcatcggccttggcgacaagcgccgcccgaaaacc
gcacgcgcgctgatcctggcgccaacgcgtgaactggcagtacagattgagcagacgatc
cgcaatgtctccaaaagcgcgcatatctccaccgcgttggttctcggcggcgtgtccaag
ctttcgcagatcaagcgtatcgcacccggcatcgatgtgctcatcgcaacacccggccgc
ctgacggacctgatgcgcgatggcctcgtggacctgtcgcagacccgctggctggttctc
gatgaagccgaccgcatgttggacatgggcttcatcaatgatgtgaagcgcattgccaag
gcaacacacgccgaacgccagaccgcactgttctcggctaccatgccaaaggagatcgca
tcgctggccgaacgtctgctgcgcgatccggtacgggtggaagtggcgccacaaggcacc
acggcttctgaaattacgcaggtcgtgcatccagtgccgacgaaggagaagcgccgcctg
ctttcagccatgctgaccgatgccgacatgcgttccgtcatcgtcttcacgcgcaccaag
cacggagcagatgccgtcgtgcgccatcttgagcgcgaccgctatgatgttgcggccatc
cacggcaataagtcgcagaatgcacgccagcgcgcgctgaacggtttccgcgatgggacc
ctacgcattctggttgcaacggatattgcagcgcgcggcatcgacgtgcccggcatcagc
catgtggtgaattacgacctgccggacgagccggaaacctatgtgcaccgcatcggccgc
accggccgcaacggcgcaagcggcgcttccatcacgctttatgatccggctacggaagaa
tcaaagctgcgggcggttgagcgcgtcacgcggagcaaactttcgatcaaggatgcgccg
gtgaagcttgcaccagcacctgtcgccaaaggccccgcaccccagggccagcggactgaa
caggctgagagccgcaaggcgcccgcgcacaagcatcgccgccccgcacagaaggcgggc
gagcagcatcgcgccggggcacatgccagcgccggtgaggccgcgccgaagccgaagcgt
cccttccgcagcaatggcggccagcgcgccgcctga
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