Burkholderia ambifaria MC40-6: BamMC406_0537
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Entry
BamMC406_0537 CDS
T00684
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
bac
Burkholderia ambifaria MC40-6
Brite
KEGG Orthology (KO) [BR:
bac00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bac03016
]
BamMC406_0537
Enzymes [BR:
bac01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BamMC406_0537
Transfer RNA biogenesis [BR:
bac03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
BamMC406_0537
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
ACB63034
UniProt:
B1YSX3
LinkDB
All DBs
Position
1:605650..607740
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AA seq
696 aa
AA seq
DB search
MNVFFEESGSFKAGSVLSRQGDAFQVELPGGRRAKVRAKDVLIEFEKPAASELMQEADTA
AQQIDLDFLWECAPAEEFTYTALAAEYFGATYGAVERAALVLRLHGSPVYFRRKGRGQYQ
RAPEDQLKMALASLERKRQQALVQVQYEEELKAGKLPEAFAGKVLGLLTRPDKNSIEYKA
LEAAAGARGVSPARLMLDCGGVASARALHEARFLAEFFPHGTGFPPVTVGPLPDDLPRAD
VEAFSIDDVTTTEIDDAFSVEHLADGRVRIGVHIAAPALGIVRGDAVDAIARTRLSTVYM
PGDKITMLPDDVVDVFTLKEGDYRPALSLYIIVNRETQDIVANETRAELVFVKSNLRHNT
LDELVNEETLAAGTGDYPHKDDIAVLWPLAQALFEKRQVARAGYGLKREVQRNTDYNFYV
EGEHVTITPRRRGSPLDLIVSELAILANSTWGAFLHDHTVPGIYRSQRGFGAPGPKRTRM
QTTAAPHEGLGVAQYAWSTSPLRRYVDLVNQWQLLACVQHGVTAKLAAPFKPKDADLYAV
VQGFDDTYTAYADYQRRMEYFWCLRWLAQEQKKQVVASVVKGDLVRLEEIPLLLHVPGLG
VHARGTRVLLDVMSLDELTIEASVRLLNVLDAPTVTSGEAADDEDETDGGDDTLVDAEDA
SAQTEAEALAESDGAVAEGGDAATGNGQASEEGRAS
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgttttcttcgaggaatcgggcagtttcaaggcgggcagcgtgctgtcgcgccag
ggcgacgcgtttcaggtcgagttgcccggcgggcggcgggcgaaggtgcgcgcgaaagac
gtgctgatcgaattcgagaagccggccgcgagcgaactgatgcaggaagccgacacggcc
gcgcagcagatcgacctggatttcctgtgggaatgcgcgccggcggaggaattcacctac
acggcgctggccgctgaatacttcggcgcgacctacggcgcggtcgagcgcgcggcgctg
gtgctgcggctgcacggctcgcccgtctacttccgccgcaaggggcgcggccagtaccag
cgcgcgccggaagaccagctcaagatggcgctcgcgtcgctcgagcgcaagcgccagcag
gcgctcgtccaggtccagtatgaagaggagctgaaggccggcaagctgccggaggcgttc
gcgggcaaggtgctcgggctgctgacgcggccggacaagaattcgatcgaatacaaggcg
ctcgaggcggcggccggcgcgcgcggcgtgtcgccggcgcggctgatgctcgactgcggc
ggcgtcgcgtcggcgcgtgcgctgcacgaggcgcgcttcctcgcggaattcttcccgcac
ggcacgggctttccgcccgtcacggtcggcccgctgccggacgatctgccgcgcgcggac
gtcgaggcgttctcgatcgacgacgtcacgacgaccgaaatcgacgacgcgttctcggtc
gagcacctggccgacggtcgcgtgcggatcggcgtgcacatcgcggcgccggcgctcggc
atcgtgcgcggcgacgcggtcgatgcgatcgcgcgtacgcgcctgtcgaccgtctatatg
ccgggcgacaagatcacgatgctgccggacgacgtcgtcgacgtgttcacgctgaaggaa
ggcgactaccgcccggcgctgtcgctgtacatcatcgtcaaccgcgagacgcaggacatc
gtcgcgaacgagacgcgcgccgaactcgtgttcgtgaagagcaacctgcgccacaacacg
ctcgacgagctcgtcaacgaagagacgctcgcggccggcaccggcgactacccgcacaag
gacgacatcgccgtgctgtggccgctcgcgcaggcactgttcgagaagcgccaggtcgcg
cgcgcgggctatggcctgaagcgcgaggtgcagcgcaacaccgactacaacttctacgtc
gaaggcgagcacgtgacgatcacgccgcgtcgccgcgggtcgccgctcgacctgatcgtg
tcggagctcgcgatcctcgcgaactcgacgtggggcgcgttcctgcacgatcacacggtg
ccgggcatctaccgctcgcagcgcggcttcggcgcaccgggcccgaagcgcacgcggatg
cagacgacggccgcgccgcacgaaggcctcggcgtcgcgcagtacgcgtggagcacgtcg
ccgctgcgccgctacgtcgacctcgtgaaccagtggcagctgctcgcgtgcgtgcagcac
ggcgtcaccgcgaagctcgccgcgccgttcaagccgaaggacgccgacctgtacgcggtc
gtgcagggcttcgacgacacctataccgcgtacgccgactaccagcgccggatggaatac
ttctggtgcctgcgctggcttgcgcaggagcagaagaagcaggttgtcgcgagcgtcgtg
aagggcgatctcgtgcgtctcgaggaaattccgctgctgctgcacgtgccggggctcggc
gtgcatgcgcgcggcacgcgcgtgctgctcgacgtgatgtcgctcgacgaactgacgatc
gaggcgtcggtgcgactgctgaacgtgctcgacgcgccgaccgtgacgagcggcgaggcg
gccgacgacgaagacgaaaccgacggcggcgacgacacgctggtcgatgcggaagacgcg
tcggcgcaaaccgaggccgaagcgctggccgaatcggacggcgcggtggccgaaggcggc
gatgccgcgaccggcaacggccaggcaagcgaagaggggcgcgcatcatga
DBGET
integrated database retrieval system
