Burkholderia ambifaria MC40-6: BamMC406_0991
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Entry
BamMC406_0991 CDS
T00684
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bac
Burkholderia ambifaria MC40-6
Pathway
bac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BamMC406_0991
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bac03019
]
BamMC406_0991
03009 Ribosome biogenesis [BR:
bac03009
]
BamMC406_0991
Enzymes [BR:
bac01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BamMC406_0991
Messenger RNA biogenesis [BR:
bac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BamMC406_0991
Ribosome biogenesis [BR:
bac03009
]
Prokaryotic type
rRNA processing factors
BamMC406_0991
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ACB63482
UniProt:
B1YVK1
LinkDB
All DBs
Position
1:complement(1081217..1084396)
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AA seq
1059 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNY
GEDRHGFLPFKEVARQYFKDGIDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGDERQELRETMAQLQIPDGMSMIARTAGIGRSAEELQ
WDLNYLLQLWRAIEAASQSGNAGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQ
ARAFMDIVMPDNVSKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALV
AIDVNSARATKGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVE
QRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSA
LQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGIVLIPNKHLDT
PHYKLERLRHDDARLDDPRASWKMAEEAARELESETGYSKRTADVKPKQEAAVKGITPER
PAPSAAPQRPAEPVAAAPAPVAVASNGGFIGWLKGLFGMSPAPAPAPVAPAPAKEQAARP
ARERTEKTEQRGGDRNRNRRGGAQQAQGGRDQAATGRGQSQRQEREGKEIREPREPREGR
EPRESREPRESREGRESREGRGPREGREPREPRESRENREPRESREPRERVEQPEAVEAG
GRGERQERGERRERGERRKPVQHAATLETVNRGENHPEAEADQAVAALPGADVGADAEAG
ARDGEERRRRRRGRRGGRREREDEGSVVEHAEQGADGENPVHAVTTEAPNAVEPARTAAP
VAVASMAAVSAAGAAVAEAEVEERAEAVAPAAVESQTAPVRVEATPVAPLEPAPVAPAAE
PAPVAPAAESEAGPAPVAVSPTDAFEVPAAPATVEAPQSARVEQAAPAPVVAAEVAPAPV
TPAPVAPAHVEPARVEAAPAETVATPAPAPAQPAPAPASASLDAVLEQAGLVWVNTDADK
FRAAQEAASRLPRPPRVPRERKAQPPVDPTPMQQVETHR
NT seq
3180 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctgttcaatgcgacgcagcaggaggagctgcgcgtcgccatcgtcgat
gggcaaaagctcatcgacatcgacatcgagacagccgggcgcgaacagcgcaaaggcaat
atctacaaaggtgtcatcacccgtatcgagccgtcgctcgaagcgtgcttcgtcaactac
ggcgaagaccgccacggcttcctgccgttcaaggaagtcgcccgccagtacttcaaggac
ggcatcgacatgcgctccgcgcgcatccaggatgcgctgcgcgaaggccaggaactgatc
gttcaggtcgagaaggaagagcgcggcaacaagggcgccgccctcacgaccttcatctcg
ctcgccggccgctacctcgtgctgatgccgaacaatccgcgcggcggcggcgtgtcgcgc
cggatcgaaggcgacgagcgccaggaactgcgcgaaacgatggcgcagctgcagattccg
gacggcatgagcatgatcgcccgcaccgcgggcatcggccgcagcgccgaggaactgcag
tgggacctgaactacctgctgcagctgtggcgcgcgatcgaagcggcgtcgcaaagcggc
aatgccggccagccgatgctgatctatctggaatcgagcctcgtgatccgcgcgatccgg
gactatttccagcccgatatcggcgaaatcctgatcgacacgaccgagatccacgatcag
gcccgtgcgttcatggacatcgtgatgccggacaacgtgtcgaaggtgaagcgctaccac
gacgacgtgccgctcttctcccgcttccagatcgagcaccagatcgagacggcctactcg
cgcacggtaccgctgccgtccggcggcgcgatcgtgatcgaccacaccgaggcactcgtc
gcgatcgacgtgaactcggcgcgcgcgaccaagggcgcggacatcgaggaaacggcgacc
cgcacgaacctcgaggcggcggacgaagtggcccgccagctgcgcctgcgcgacctcggc
ggcctgatcgtgatcgacttcatcgacatggagtcggccaagagccagcgcgaagtcgag
caacgcctgaaggacgcgctcaagcacgaccgtgcgcgcgtgcagatgggcaagatctcc
cgcttcggcctgatggaactgtcgcgccagcgcctgcgtccggcgctgtcggaaggcagc
cacgtgacgtgcccgcgctgtaacggcaccggccacatccgcgataccgaatcgtccgcg
ctgcaggtcctgcggatcattcaggaagaagcgatgaaggaaaacaccgcggcgatccac
tgccaggtgccggtcgaggtgaccgccttcctgctcaacgaaaaacgtcaggaaatcaac
aagatcgagtcgcgcttcaaggtcggcatcgtgctgatcccgaacaagcacctcgatacg
ccgcactacaagctcgagcgcctgcgtcatgacgacgcgcgcctcgacgatccgcgcgcg
tcctggaagatggccgaggaagccgcccgcgaactggagtcggaaaccggctacagcaag
cgcacggccgacgtgaagccgaagcaggaagcggcggtcaagggcatcacgcccgagcgc
ccggcgccgagcgcggcaccgcagcgcccggccgagccggttgcggcggcgcccgccccg
gtcgccgtggcaagcaacggcggcttcatcggctggctgaagggtctgttcggcatgtcg
cccgctccggcgcccgcgccggttgcaccggcaccggcgaaggaacaggctgcccgtccg
gcccgcgagcgcaccgagaagaccgagcagcgcggcggcgatcgcaaccgcaaccgccgc
ggcggcgcccagcaggctcagggaggccgcgaccaggcagcgacgggccgtggccagtcg
caacgccaggaacgcgaaggcaaggaaattcgcgagccgcgtgaaccgcgcgagggtcgt
gaaccgcgtgaaagccgcgagccgcgcgaaagccgtgagggtcgcgaaagtcgtgagggc
cgtggcccgcgcgaaggccgcgaaccgcgcgagccgcgtgaaagccgtgagaaccgcgag
ccgcgcgagagccgcgaaccgcgcgagcgcgtcgagcagccggaagccgtcgaggccggc
ggccgcggcgagcgccaggaacgcggcgaacgtcgcgagcgtggtgagcgccgcaagccg
gtgcagcacgctgcgacgcttgagaccgtcaatcgtggcgagaaccatccggaagcggaa
gccgaccaggccgtcgcagcgctgccgggcgccgatgtcggtgccgacgcggaagccggc
gcacgtgacggcgaggaacgtcgccgtcgccgccgcggccgccgcggtggtcgtcgcgag
cgcgaggacgaaggctcggtggtcgagcacgccgagcaaggtgcagatggcgaaaacccc
gtgcacgccgtgacgacggaagcgccgaacgcggtcgagccggcccgtacggccgcaccg
gtcgccgtggcgtccatggcagccgtttcggcagcaggcgccgcggttgcggaagccgaa
gtcgaggaacgtgccgaagcggtcgcaccggccgcggtcgagtcgcaaacggcaccggtt
cgtgtcgaagcgacgccggtcgcaccgctcgagcccgccccggtcgcaccggcagccgaa
ccggcaccggtcgcgccggccgccgaatcggaagccggtccggctccggtcgcggtttcg
ccgaccgatgcgttcgaagtgccggccgcaccggctaccgtcgaagcgccgcagtctgcg
cgcgtcgaacaggccgcaccggcaccggtcgtcgcagctgaagtcgctccggcacccgtt
actccggcaccggtcgcaccggctcacgtcgaaccggctcgcgtcgaggccgcaccggcc
gaaaccgttgccacgccggctccggcgcccgcccagccggcccccgcgcctgcttcggcg
agcctcgatgccgtgctggagcaagccggtctcgtgtgggtgaacacggacgccgacaag
ttccgcgctgcccaggaagccgcgtcgcgcctgccgcgtccgccccgcgtgccgcgcgag
cgcaaggcgcagccgccggtcgacccgactccgatgcagcaggtcgaaacgcaccgctaa
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